View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4105_low_11 (Length: 349)
Name: NF4105_low_11
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_11 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 800 - 538
Alignment:
| Q |
18 |
gtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
117 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
800 |
gtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
701 |
T |
|
| Q |
118 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
601 |
T |
|
| Q |
218 |
acttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
283 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
600 |
acttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 8453 - 8191
Alignment:
| Q |
18 |
gtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
117 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453 |
gtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
8354 |
T |
|
| Q |
118 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8353 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
8254 |
T |
|
| Q |
218 |
acttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
283 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8253 |
acttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
294 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
348 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
294 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
348 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 6506775 - 6506513
Alignment:
| Q |
18 |
gtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
117 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506775 |
gtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
6506676 |
T |
|
| Q |
118 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506675 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
6506576 |
T |
|
| Q |
218 |
acttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
283 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6506575 |
acttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 6521954 - 6522161
Alignment:
| Q |
18 |
gtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
6521954 |
gtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttgg |
6522053 |
T |
|
| Q |
118 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
217 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |||||| ||| |||||| |||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6522054 |
ttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattc |
6522147 |
T |
|
| Q |
218 |
acttttctatcaac |
231 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
6522148 |
attcttctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 6517081 - 6516855
Alignment:
| Q |
18 |
gtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| | ||||||| |||||||| ||||||| |
|
|
| T |
6517081 |
gtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttgg |
6516982 |
T |
|
| Q |
118 |
ataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattc |
217 |
Q |
| |
|
| |||||||||| |||||| ||| |||||| |||| || ||| ||| |||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6516981 |
ttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatg------agtgctagagttgttagacccagttgttatttgagatatgaaaccgattc |
6516888 |
T |
|
| Q |
218 |
acttttctatcaacaaacacaagattcaccttc |
250 |
Q |
| |
|
||| || ||||||| |||||||||||||||||| |
|
|
| T |
6516887 |
actcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 6512679 - 6512451
Alignment:
| Q |
21 |
ggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggata |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||| || ||||||| ||||| ||||||| | |
|
|
| T |
6512679 |
ggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaa |
6512580 |
T |
|
| Q |
121 |
aatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcact |
220 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| || || |||| |||| || ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
6512579 |
aatctatcaaagcaatcccaagatgttgtaacaacaggttg------ggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcact |
6512486 |
T |
|
| Q |
221 |
tttctatcaacaaacacaagattcaccttcatcat |
255 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| |
|
|
| T |
6512485 |
cttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
294 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
348 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 47759954 - 47759914
Alignment:
| Q |
51 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
91 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47759954 |
caaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 6499919 - 6499879
Alignment:
| Q |
57 |
atatatggtcttgttcaatgcacacctgatttgtctgaaac |
97 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
6499919 |
atatatggtttggttcaatgtacacctgatttgtctgaaac |
6499879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 47713039 - 47712999
Alignment:
| Q |
51 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
91 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
47713039 |
caaaccatatatggtcttgtgcagtgtacacctgatttgtc |
47712999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University