View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_12 (Length: 343)
Name: NF4105_low_12
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 44918654 - 44918976
Alignment:
| Q |
1 |
tgataaatataaatttgtattgtaagaagatcaatgaaagttggtatatgctaagttgtgtgttgaccatggccaccaaattgggatgggaaggttggat |
100 |
Q |
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| T |
44918654 |
tgataaatataaatttgtattgtaagaagatcaatgaaagttggtatatgctaagttgtg--ttgaccatggccaccaaattgggatgggaaggttggat |
44918751 |
T |
|
| Q |
101 |
tggattgaatcacgacgcagtgaaacaccttcactgtgtcgaggcaacgaagtatgaagatcaannnnnnnnnnnnnnnnnnnnacggaaattctagtat |
200 |
Q |
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| T |
44918752 |
tggattgaatcacgacgcagtgaaacaccttcactgtgtcgaggcaacgaagtatgaagatcaa--agagagagagagagggggacggaaattctagtat |
44918849 |
T |
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| Q |
201 |
gtaaagaaaaaaggaaaataataatgtttgggggtttgtccaattaaataaatacctagtaagtttatgtttgcgaatattaatagttgttcctcctaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44918850 |
gtaaagaaaaaaggaaaataataatgtttgggggtttgtccaattaaataaatacctagtaagtttatgtttgcgaatattaatagttgttcctcctaat |
44918949 |
T |
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| Q |
301 |
agtttaagccttttggggggcatttag |
327 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
44918950 |
agtttaagcctttcggggggcatttag |
44918976 |
T |
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