View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_14 (Length: 313)
Name: NF4105_low_14
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 37140303 - 37140010
Alignment:
| Q |
8 |
tatatcattccaatgttcttcccctaaaatttgagaaaaacggatgaaattgaaggttccccccatgtattgcatgataaaaatctttaactaataaaat |
107 |
Q |
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| T |
37140303 |
tatatcattccaatgttcttcccctaaaatttgagaaaaccggatgaaattgaaggttccccccatgtattgcatgataaaaa-----atctaataaaat |
37140209 |
T |
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| Q |
108 |
gatcactatttttt-ccattctatttgttcaaatatctatagcataaaataagaaagagaaagtgaaacaaatgaaatgttgttaagagagtgttattat |
206 |
Q |
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| T |
37140208 |
gatcactatttttttccattctatttgttcaaatatctatagcataaaataagaaagagaaagtgaaacaaatgaaatgttgttaagagagtgttattat |
37140109 |
T |
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| Q |
207 |
tacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgttgacccatattcttc |
305 |
Q |
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| T |
37140108 |
tacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgttgacccattttcttc |
37140010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 23336039 - 23335947
Alignment:
| Q |
206 |
ttacaggattgagagtggtgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgttgacccat |
298 |
Q |
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| T |
23336039 |
ttacaggattaagagtggtgtgttctttgaaactttcttcaagaaaagcagattgatctttagagagtcttagtttcttcctagttgacccat |
23335947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25902258 - 25902322
Alignment:
| Q |
226 |
tgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttccttgt |
290 |
Q |
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| T |
25902258 |
tgttctttgaaactttcttcaagaaaagcagattgatccttagagagcctaagtttcttccttgt |
25902322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 40299733 - 40299685
Alignment:
| Q |
200 |
ttattattacaggattgagagtggtgtgttctttgaagctatcttcaag |
248 |
Q |
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| T |
40299733 |
ttatgattacaggattgagagtgctgtgttctttgaagctttcttcaag |
40299685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 41452397 - 41452460
Alignment:
| Q |
224 |
tgtgttctttgaagctatcttcaagaaaagctgattgttccttagagagtctgagtttcttcct |
287 |
Q |
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| T |
41452397 |
tgtgttctttgaaggtttcttcaagaatagctgattggtctttagagagtctaagttttttcct |
41452460 |
T |
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