View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4105_low_15 (Length: 299)
Name: NF4105_low_15
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_15 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 862 - 1143
Alignment:
| Q |
1 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
862 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaac |
961 |
T |
|
| Q |
101 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
962 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggag |
1061 |
T |
|
| Q |
201 |
gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1062 |
gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagag |
1143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 8515 - 8797
Alignment:
| Q |
1 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8515 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaac |
8614 |
T |
|
| Q |
101 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcg-attttgacaaagttgtgttagaagggcagttgaattttgga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8615 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttgga |
8714 |
T |
|
| Q |
200 |
ggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8715 |
ggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagag |
8797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 6506837 - 6507118
Alignment:
| Q |
1 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6506837 |
ttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaac |
6506936 |
T |
|
| Q |
101 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506937 |
ggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggag |
6507036 |
T |
|
| Q |
201 |
gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6507037 |
gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagag |
6507118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 6521832 - 6521617
Alignment:
| Q |
67 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
166 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
6521832 |
gcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac |
6521733 |
T |
|
| Q |
167 |
aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt |
266 |
Q |
| |
|
|| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
6521732 |
aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagt |
6521633 |
T |
|
| Q |
267 |
gtttatgccataagag |
282 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
6521632 |
gttgtttccataagag |
6521617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 6512814 - 6513019
Alignment:
| Q |
77 |
tttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt |
176 |
Q |
| |
|
||||||| | ||| ||||||||||||| |||| |||||||||||||| | || || || ||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
6512814 |
tttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgt |
6512913 |
T |
|
| Q |
177 |
tagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgcca |
276 |
Q |
| |
|
||||| | ||| |||||| | | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6512914 |
tagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattcca |
6513013 |
T |
|
| Q |
277 |
taagag |
282 |
Q |
| |
|
|||||| |
|
|
| T |
6513014 |
taagag |
6513019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 87 - 282
Target Start/End: Original strand, 6517223 - 6517418
Alignment:
| Q |
87 |
accaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggca |
186 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| |||||||||| |||||||||||| || |
|
|
| T |
6517223 |
accaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacaca |
6517322 |
T |
|
| Q |
187 |
gttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
6517323 |
gttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagag |
6517418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
| Q |
67 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac |
166 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac |
47778051 |
T |
|
| Q |
167 |
aaagttgtgt |
176 |
Q |
| |
|
|||||||||| |
|
|
| T |
47778050 |
aaagttgtgt |
47778041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 281
Target Start/End: Original strand, 47760133 - 47760317
Alignment:
| Q |
91 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg |
190 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||| || |||| |||| ||||||||||||||| | ||| ||||||||| ||| ||||| | ||| |
|
|
| T |
47760133 |
aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg |
47760226 |
T |
|
| Q |
191 |
aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataaga |
281 |
Q |
| |
|
||| | ||| ||| | | ||| | |||||||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
47760227 |
aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataaga |
47760317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
| Q |
91 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt |
176 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||| |
|
|
| T |
6523810 |
aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt |
6523725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 47713336 - 47713403
Alignment:
| Q |
215 |
catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
47713336 |
catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagag |
47713403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
| Q |
91 |
aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
156 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47782034 |
aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt |
47781969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
| Q |
67 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt |
156 |
Q |
| |
|
|||||||| ||||| || | ||| | ||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
47788272 |
gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt |
47788183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 47745921 - 47745986
Alignment:
| Q |
217 |
tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagag |
282 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
47745921 |
tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagag |
47745986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
| Q |
115 |
aacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaat |
214 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||| || |||||||||||||| || |||||| || | ||||| ||||||||| |
|
|
| T |
722305 |
aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat |
722207 |
T |
|
| Q |
215 |
catcgggtttgacatctcctctacacagtccaatagcgtttacttt |
260 |
Q |
| |
|
||| | | || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
722206 |
cattgagcttaacatctcctctacatagtccaaccacgtttacttt |
722161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 704425 - 704384
Alignment:
| Q |
240 |
cagtccaatagcgtttactttgtcggtgtttatgccataaga |
281 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
704425 |
cagtccaatagcgtttactttgtcagtgtttatgtcataaga |
704384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University