View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_2 (Length: 628)
Name: NF4105_low_2
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 53053592 - 53053348
Alignment:
| Q |
1 |
ttgttgaaacttctgattcacggcagaacgaaccaattgttcgacattggggcatacattgttatagaaaccacgagtgagttgagctgagcttgtagta |
100 |
Q |
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| T |
53053592 |
ttgttgaaacttctgattcacggcagaacgaaccaattgttcgacattggggcatacattgttatagaaaccacgagtgagttgagctgagcttgtagta |
53053493 |
T |
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| Q |
101 |
gctgtgaggagaagaagcaatgacaagaagacaaagcttggagcttccattgctaatgaatgttctgttttgttgctacaattgttgtttgcaacacagt |
200 |
Q |
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| T |
53053492 |
gctgtgaggagaagaagcaatgacaagaagacaaagcttggagcttccattgctaatgaatgttctgttttgttgctacaattgttgtttgcaacacagt |
53053393 |
T |
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| Q |
201 |
tatttatagttagttaatatggcactaacttgagctagcttatgc |
245 |
Q |
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| T |
53053392 |
tatttatagttagttaatatggcactaacttgagctagcttatgc |
53053348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 305 - 610
Target Start/End: Complemental strand, 53053288 - 53052997
Alignment:
| Q |
305 |
gggttacacttttgaaggggcatgattgaagaataattgattgatgagaatcaaaacaaaagtctgttacatggacagtctggctagagtgatataattt |
404 |
Q |
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| T |
53053288 |
gggttacacttttgaaggggcatgattaaagaataattgattgatgagaatcaaaacgaaagtctgttacatggacagtctggctagagtgatataattt |
53053189 |
T |
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| Q |
405 |
ttatttaagagtatgtgtaatattgttatgttatggactaaaggatgattggggatacaatattgacaaagtaccaaaaagacttt-aaaatttgaagac |
503 |
Q |
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| T |
53053188 |
ttatttaagagtatgtgtcatattgctatgttatggactaaaggatgattggggttacaatattgacaaagtaccaaaaagactttaaaaatttgaagac |
53053089 |
T |
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| Q |
504 |
ttattagagtaacatagtatattgcgtgaagcatctaaactaaactgcttgttaagtgttgcttgggcagccagagtttactattataatatggggtggt |
603 |
Q |
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| T |
53053088 |
-tattagagtaacatagtatattgcgtgaagcatctaaactaaac--------------tgcttgggcagccagagtttactattataatatggggtggt |
53053004 |
T |
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