View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_23 (Length: 238)
Name: NF4105_low_23
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 13052632 - 13052830
Alignment:
| Q |
19 |
agcatggaaaatcatttccgctaagaattggtgtgttgtgtaccatgatgtttttgagaggggttgacctaagccattgttcttcacataagggcacata |
118 |
Q |
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| T |
13052632 |
agcatggaaaatcatttctgctaacaattggtgtgttgtgtaccatgatgtttttgagaggggttgacctaagccattgttcttcacatgagggcacata |
13052731 |
T |
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| Q |
119 |
tttgtgtaaatgttgagattttcgcagttcttgagtaggtcaaggttgaaatgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
217 |
Q |
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| T |
13052732 |
tttgtgtagatgttgagattttcgcagtttttgagtaggtcaaggttgaaacgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
13052830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 13042874 - 13042942
Alignment:
| Q |
149 |
ttgagtaggtcaaggttgaaatgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
217 |
Q |
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| T |
13042874 |
ttgagtaggtcaaggttgaaacgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
13042942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 13047765 - 13047833
Alignment:
| Q |
149 |
ttgagtaggtcaaggttgaaatgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13047765 |
ttgagtaggtcaaggttgaaacgtggagggagattgtaaatgtagaatgatggagttgatccatcgcat |
13047833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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