View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4105_low_26 (Length: 235)

Name: NF4105_low_26
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4105_low_26
NF4105_low_26
[»] chr3 (8 HSPs)
chr3 (15-199)||(50364586-50364770)
chr3 (72-198)||(10495230-10495356)
chr3 (72-198)||(36905751-36905877)
chr3 (72-198)||(38054835-38054961)
chr3 (127-198)||(38054742-38054813)
chr3 (144-195)||(26570926-26570977)
chr3 (124-170)||(50365201-50365247)
chr3 (72-133)||(31017188-31017248)
[»] chr4 (10 HSPs)
chr4 (72-198)||(54052647-54052773)
chr4 (72-198)||(27587593-27587719)
chr4 (70-197)||(38078978-38079104)
chr4 (72-149)||(1997113-1997190)
chr4 (72-198)||(5591196-5591317)
chr4 (72-198)||(48127053-48127174)
chr4 (140-198)||(1995705-1995763)
chr4 (72-142)||(29973335-29973405)
chr4 (72-138)||(46575740-46575806)
chr4 (156-198)||(1995804-1995846)
[»] chr8 (14 HSPs)
chr8 (72-198)||(39460605-39460731)
chr8 (72-188)||(25128348-25128464)
chr8 (124-198)||(39460750-39460824)
chr8 (124-198)||(25128246-25128320)
chr8 (140-198)||(34179496-34179554)
chr8 (125-198)||(30873493-30873565)
chr8 (128-198)||(9208540-9208610)
chr8 (124-198)||(9208713-9208787)
chr8 (124-190)||(13474371-13474437)
chr8 (72-120)||(7464036-7464084)
chr8 (72-120)||(13474153-13474201)
chr8 (132-198)||(13474286-13474352)
chr8 (145-190)||(1283095-1283140)
chr8 (140-172)||(7463910-7463942)
[»] chr2 (7 HSPs)
chr2 (72-198)||(36600274-36600402)
chr2 (72-198)||(22302289-22302415)
chr2 (72-198)||(30956624-30956743)
chr2 (72-198)||(10923500-10923615)
chr2 (128-198)||(30956766-30956836)
chr2 (125-198)||(10923407-10923480)
chr2 (131-198)||(36600178-36600244)
[»] scaffold0013 (1 HSPs)
scaffold0013 (72-198)||(94345-94471)
[»] scaffold0024 (2 HSPs)
scaffold0024 (85-198)||(111724-111837)
scaffold0024 (142-198)||(111641-111697)
[»] chr5 (9 HSPs)
chr5 (72-194)||(31056171-31056297)
chr5 (84-196)||(15146045-15146157)
chr5 (72-190)||(36411740-36411858)
chr5 (115-198)||(31042359-31042446)
chr5 (124-198)||(31042465-31042539)
chr5 (124-198)||(31056314-31056388)
chr5 (132-197)||(36411639-36411703)
chr5 (148-198)||(37945451-37945501)
chr5 (142-171)||(4963443-4963472)
[»] chr6 (6 HSPs)
chr6 (87-195)||(24081921-24082029)
chr6 (74-198)||(19986711-19986835)
chr6 (111-189)||(11431419-11431497)
chr6 (84-165)||(24082066-24082148)
chr6 (84-120)||(14217748-14217784)
chr6 (128-165)||(17315510-17315547)
[»] chr1 (9 HSPs)
chr1 (72-198)||(14485646-14485772)
chr1 (71-198)||(18297527-18297654)
chr1 (72-174)||(13281859-13281961)
chr1 (134-188)||(14188424-14188478)
chr1 (144-198)||(17794861-17794915)
chr1 (124-188)||(13281760-13281825)
chr1 (123-171)||(41618117-41618166)
chr1 (124-192)||(14485559-14485627)
chr1 (124-195)||(27295690-27295762)
[»] chr7 (5 HSPs)
chr7 (84-198)||(30850587-30850702)
chr7 (126-198)||(19544279-19544351)
chr7 (111-198)||(6455778-6455865)
chr7 (140-198)||(316913-316971)
chr7 (128-189)||(6455693-6455755)
[»] scaffold1554 (1 HSPs)
scaffold1554 (140-198)||(1455-1513)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 50364586 - 50364770
Alignment:
Q  15 caaagaacatcaaggttcaagttagcaaaaatgtatttttatttcgacnnnnnnnttaatatccactaatgtaaaccaatttaaagtaagagataattta 114  Q
    ||||||||||||||||||||  ||||||||||||||||||||||  ||        ||||||||||||||||||| ||||||||||||||||||||||||    
T  50364586 caaagaacatcaaggttcaaaatagcaaaaatgtatttttatttgaacaaaaaaactaatatccactaatgtaaatcaatttaaagtaagagataattta 50364685  T
Q  115 gtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaatc 199  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50364686 gtaaatattcctcaaactatcagttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaatc 50364770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 10495356 - 10495230
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10495356 aatatccactggtgtaaaccaatttaaagtaagagatagtttagtaaatatccctcaagctatttgttataaaataaaactgggtctaagttaacaaatt 10495257  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||||||||||    
T  10495256 ggtgcaagttaacaaatatgttttaat 10495230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 36905751 - 36905877
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| ||||||||||||||||||||  |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  36905751 aatatccactagtgtaaaccaatttaaagtaaatgatagtttagtaaatatccctcaaactatttgttataaaataaaagtgggtctaagttagcaaatt 36905850  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || ||||| |||||||||||||    
T  36905851 ggtgcaagttaacgaatatgttttaat 36905877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 38054961 - 38054835
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  38054961 aatatccactagtgtaaaccaatttaaagtaagggatagtttagtaaatatccctcgagctatttgttataaaataaaagtgagtctaagttggcaaatt 38054862  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||||||||||    
T  38054861 ggtgcaagttaacaaatatgttttaat 38054835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 38054813 - 38054742
Alignment:
Q  127 caagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||  ||||||||||||||||||||||||||||||||  || || |||||||||||||||||||    
T  38054813 caagctatttgcaataaaataaaagtgggtctaagttagcaaattactgcaagttaacaaatatgttttaat 38054742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 26570977 - 26570926
Alignment:
Q  144 aataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgtttt 195  Q
    ||||||||||||||||||||| |||||||||| || |||| |||||||||||    
T  26570977 aataaaagtgggtctaagttaacaaattggtgcaagttaaaaaatatgtttt 26570926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 50365201 - 50365247
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaat 170  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||    
T  50365201 cctcaagttatttgtactaaaataaaagtgggtctaagttagcaaat 50365247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 31017188 - 31017248
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagcta 133  Q
    ||||||||||| | | ||||||||||||||||  ||||||||||| ||||| ||||||||||    
T  31017188 aatatccactagtttgaaccaatttaaagtaaaggataatttagt-aatatccctcaagcta 31017248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 54052647 - 54052773
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54052647 aatatccactagtttaaaccaatttaaagtaagggatagtttagtaaatatccctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 54052746  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||||||||||    
T  54052747 ggtgcaagttaacaaatatgttttaat 54052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 27587593 - 27587719
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27587593 aatacccactagtgtaaaccaatttaaagtaagagatagtttagtaaatatccctcaagctatttgttataaattaaaagtgggtctaagttaacaaatt 27587692  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||||||||||    
T  27587693 ggtgcaaattaacaaatatgttttaat 27587719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 38078978 - 38079104
Alignment:
Q  70 ttaatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaa 169  Q
    ||||||| || || ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||    
T  38078978 ttaatattcattagtgtaaaccaatttaaagcaagagataattaagtaaatatccctcaagctatttattataaaatacaagtggatctaagttagcaaa 38079077  T
Q  170 ttggtgtaatttaacaaatatgttttaa 197  Q
    || ||| || ||||||||||||||||||    
T  38079078 tttgtg-aagttaacaaatatgttttaa 38079104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 1997190 - 1997113
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaa 149  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  1997190 aatatccactagtgtaaaccaatttaaagtaagggatagtttagtaaatatccctcaagctatttgttataaaataaa 1997113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 5591196 - 5591317
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||  |||||||||||||| |||||     | ||||||||| || |||||| |||||||||||||||||||||| | ||||||||||||||||    
T  5591196 aatatccactcgtgtaaaccaatttatagtaa-----agtttagtaaacatccctcaaactatttgttataaaataaaagtagctctaagttagcaaatt 5591290  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    | || || |||||||||||||||||||    
T  5591291 gatgcaagttaacaaatatgttttaat 5591317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 48127174 - 48127053
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||  |||||||||||||| |||||     | ||||||||| || |||||| |||||||||||||||||||||| | ||||||||||||||||    
T  48127174 aatatccactcgtgtaaaccaatttatagtaa-----agtttagtaaacatccctcaaactatttgttataaaataaaagtagctctaagttagcaaatt 48127080  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    | || || |||||||||||||||||||    
T  48127079 gatgcaagttaacaaatatgttttaat 48127053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 1995763 - 1995705
Alignment:
Q  140 ataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  1995763 ataaaataaaagtgggtctaagttagcaaattggtgcaagtcaacaaatatgttttaat 1995705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 29973405 - 29973335
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttata 142  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||| | |||||| ||| ||| ||||    
T  29973405 aatacccactattgtaaaccaatttaaagtaagagatagtttagtaaatgtccctcaaactagttggtata 29973335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 46575740 - 46575806
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgt 138  Q
    ||||||||||| || |||||||||||||| ||| |||| ||||||||||||  ||||||||||||||    
T  46575740 aatatccactagtgcaaaccaatttaaagaaagggatagtttagtaaatatctctcaagctatttgt 46575806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 1995846 - 1995804
Alignment:
Q  156 tctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  1995846 tctaagttagcaaattcgtgcaagttaacaaatatgttttaat 1995804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 39460605 - 39460731
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  39460605 aatatccactagtgtaaaccaatttaaagtaagggatagtttagtaaatatccctcaagctatttgttataaaataaaagttggtctaagttaacaaatt 39460704  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||| ||||||||||    
T  39460705 ggtgcaagttaacaaaaatgttttaat 39460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 25128464 - 25128348
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||| ||||| ||||||||||||||||||| | ||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  25128464 aatattcactagtgtaaaccaatttaaagtatgggataatttagtaaatatccttcaaactatttgttataaaataaaagtgagtctaagttagtaaatt 25128365  T
Q  172 ggtgtaatttaacaaat 188  Q
    |||| || |||| ||||    
T  25128364 ggtgcaagttaataaat 25128348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 39460750 - 39460824
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  39460750 cctcaagctatttgtaataaaataaaagtgggtctaagttagcaaattggtgcaagttaacaaatctgttttaat 39460824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 25128320 - 25128246
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||    
T  25128320 cctcaagctatttgtaataaaataaaagtggatctaagttagcaaattgatgcaagttaacaaatatgttttaat 25128246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 34179496 - 34179554
Alignment:
Q  140 ataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34179496 ataaaataaaagtgggtctaagttagcaaattggtgcaagttaacaaatatgttttaat 34179554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 30873565 - 30873493
Alignment:
Q  125 ctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||| || |||||||||||||||||||    
T  30873565 ctcaagctatttgt-ataaaataaaagtgggcctaagttagtaaattggtgcaagttaacaaatatgttttaat 30873493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 9208610 - 9208540
Alignment:
Q  128 aagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||  || |||||||||||||||||||    
T  9208610 aagctatttgtaataaaataaaagtgggtctaatttagcaatttggtaaaagttaacaaatatgttttaat 9208540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 9208787 - 9208713
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||| |||||||  |||||||||||| ||| ||| |||||||||| ||| || |||||||||||||||||||    
T  9208787 cctcaagttatttgtagtaaaataaaagttggtataaattagcaaatttgtgcaaattaacaaatatgttttaat 9208713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 13474371 - 13474437
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatat 190  Q
    ||||| ||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||||||    
T  13474371 cctcatgctatttgtaataaaataaaagtgggtttaagttcgcaaattggtgaaagtcaacaaatat 13474437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 7464084 - 7464036
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaat 120  Q
    ||||||| ||| ||||||||||||||||||||| |||| ||||||||||    
T  7464084 aatatcccctagtgtaaaccaatttaaagtaagggatagtttagtaaat 7464036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 13474153 - 13474201
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaat 120  Q
    ||||||||| | |||||||||||||||||||| ||||| ||||||||||    
T  13474153 aatatccacaagtgtaaaccaatttaaagtaaaagatagtttagtaaat 13474201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 13474286 - 13474352
Alignment:
Q  132 tatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||| ||||||||||| |  || ||||||||| |||||||| || || ||||||||||||||||    
T  13474286 tatttgtcataaaataaaaatcagtttaagttagccaattggtgcaagttcacaaatatgttttaat 13474352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 1283140 - 1283095
Alignment:
Q  145 ataaaagtgggtctaagttagcaaattggtgtaatttaacaaatat 190  Q
    |||||| |||||||||||||||||| ||||| || |||||||||||    
T  1283140 ataaaaatgggtctaagttagcaaagtggtgcaaattaacaaatat 1283095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 7463942 - 7463910
Alignment:
Q  140 ataaaataaaagtgggtctaagttagcaaattg 172  Q
    ||||||||||| |||||||||||||||||||||    
T  7463942 ataaaataaaaatgggtctaagttagcaaattg 7463910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 36600402 - 36600274
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaat-attcctcaagctatttgttataaaataaaagtgggtctaagttagcaaa- 169  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||     
T  36600402 aatatccactagtgtaaaccaatttaaagtaagagatagtttagtaaattatccctcaagctatttgttataaaataaaagtgggtcaaagttagcaaat 36600303  T
Q  170 ttggtgtaatttaacaaatatgttttaat 198  Q
    |||||| || |||||||||||||||||||    
T  36600302 ttggtgcaagttaacaaatatgttttaat 36600274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 22302289 - 22302415
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||| ||||||| ||||||| ||||||||||| |||| ||||||||||||   ||||| ||||||||||||||||||||||||| ||| | ||||||||    
T  22302289 aatattcactaatataaaccattttaaagtaagggatattttagtaaatatcattcaagttatttgttataaaataaaagtgggtttaaatgagcaaatt 22302388  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||||||||||    
T  22302389 ggtgcaagttaacaaatatgttttaat 22302415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 30956624 - 30956743
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| | ||||||||||||||||||| |||| ||||||       ||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  30956624 aatatccactagtataaaccaatttaaagtaagggatagtttagtc------cctcaagttatttgttataaaataaaagtgg-tctaagttatcaaatt 30956716  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || | |||||||||||||||||    
T  30956717 ggtgcaagtgaacaaatatgttttaat 30956743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 10923615 - 10923500
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| |||||| ||||||||||||||| | | ||||||||||| || ||||||||||||||||||||||          ||||||||||||||    
T  10923615 aatatccactagtgtaaatcaatttaaagtaagacacagtttagtaaata-tcgtcaagctatttgttataaaata----------taagttagcaaatt 10923527  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||| ||||||||||    
T  10923526 ggtgcaagttaacaaacatgttttaat 10923500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 30956766 - 30956836
Alignment:
Q  128 aagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||| | ||||||||||||||| ||||||||| |||||||||| || ||||||| |||||||||||    
T  30956766 aagctatttctaataaaataaaagtggatctaagttaacaaattggtgcaagttaacaattatgttttaat 30956836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 10923480 - 10923407
Alignment:
Q  125 ctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||| |||||||| |||||||||||   ||||||||||||||| |||||| || |||||||||||||||||||    
T  10923480 ctcaaactatttgtaataaaataaaaaatggtctaagttagcaatttggtgcaagttaacaaatatgttttaat 10923407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 36600244 - 36600178
Alignment:
Q  131 ctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||| |||| ||||| ||| ||||||||||| ||||||||| || ||||||||| |||||||||    
T  36600244 ctatttgtaataatataaa-gtgagtctaagttagtaaattggtgcaagttaacaaatgtgttttaat 36600178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 94345 - 94471
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||    
T  94345 aatatccacgagtgtaaaccaatttaaagtaagggatagtttagtaaatatccctcaagctatttgttataaaataaaagggggtctaagttagcaagtt 94444  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    | || || |||||||||||||||||||    
T  94445 gatgcaagttaacaaatatgttttaat 94471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 111837 - 111724
Alignment:
Q  85 gtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaac 184  Q
    |||||||||||||||||||| |||| |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  111837 gtaaaccaatttaaagtaagggatagtttagtaaatatccatcaaactatttgttataaaataaaagtgggtctaagttagcaaattggtgtagattaac 111738  T
Q  185 aaatatgttttaat 198  Q
    ||||||||||||||    
T  111737 aaatatgttttaat 111724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 111697 - 111641
Alignment:
Q  142 aaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||||| | | | |||||||||||||||| || ||||||||||| |||||||    
T  111697 aaaataaaagtagatttgagttagcaaattggtgcaagttaacaaatatattttaat 111641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 31056171 - 31056297
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagtt----agca 167  Q
    ||||||||||  ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||    
T  31056171 aatatccacttgtgtaaaccaatttaaagtaagggatgatttagtaaatatccctcaagctatttgttataaaataaaagtgggtctaagttagcaagca 31056270  T
Q  168 aattggtgtaatttaacaaatatgttt 194  Q
    ||||||||||| |||||||| ||||||    
T  31056271 aattggtgtaagttaacaaacatgttt 31056297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 15146045 - 15146157
Alignment:
Q  84 tgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaa 183  Q
    ||||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||    
T  15146045 tgtaaaccaatttaaagtaagggatagtttagtaaatatcccttaagctatttgttataaaataaaagtgggtctaaattagaaaattagtgcaagttaa 15146144  T
Q  184 caaatatgtttta 196  Q
    |||||||||||||    
T  15146145 caaatatgtttta 15146157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 36411858 - 36411740
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||| ||||||| || |||| ||||| |||| | || ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  36411858 aatatccactagtgtaaactaaattaatgtaagtgatagtatattaaatatccttcaagctatttgttataaaataaaggtgggtctaagttagcaaatt 36411759  T
Q  172 ggtgtaatttaacaaatat 190  Q
    | || || |||||||||||    
T  36411758 gatgcaagttaacaaatat 36411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 31042359 - 31042446
Alignment:
Q  115 gtaaatattcctcaagctatttgttataaaataaaagtgggtctaagtt----agcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||| ||||||||||    
T  31042359 gtaaatatccctcaagctatttgttataaaataaaagtgggtctaagttagcaagcaaattggtgtaagttaacaaacatgttttaat 31042446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 31042465 - 31042539
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  31042465 cctcaaactatttgtaataaaataaaagtgggtctaagttagcaaattggtgcaagttaacaaataagttttaat 31042539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 31056314 - 31056388
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  31056314 cctcaaactatttgtaataaaataaaagtgggtctaagttagcaaattggtgcaagttaacaaataagttttaat 31056388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 36411703 - 36411639
Alignment:
Q  132 tatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaa 197  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    |||||||||||||||||    
T  36411703 tatttgtaataaaataaaagtgggtctaagttagc-aattggtgtcgggtaacaaatatgttttaa 36411639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 37945451 - 37945501
Alignment:
Q  148 aaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| |||||||    
T  37945451 aaagtgggtctaagttagtaaattggggtaaattaacaaatatattttaat 37945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 4963472 - 4963443
Alignment:
Q  142 aaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||||||||||||||||||||||    
T  4963472 aaaataaaagtgggtctaagttagcaaatt 4963443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 24082029 - 24081921
Alignment:
Q  87 aaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaa 186  Q
    |||||||||||||||||  |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  24082029 aaaccaatttaaagtaaatgatagtttaataaatatccctcaagctatttgttataaaataaaagtgggtctaagttagaaaattggtgcaaattaacaa 24081930  T
Q  187 atatgtttt 195  Q
    |||||||||    
T  24081929 atatgtttt 24081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 19986711 - 19986835
Alignment:
Q  74 tatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattgg 173  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| || |||||||||||| |||||||||||||||     
T  19986711 tatccactattgtaaaccaatttaaagtaagggatagtttagtaaatatccctcaaactatttgttaaaatataaaagtgggtttaagttagcaaattga 19986810  T
Q  174 tgtaatttaacaaatatgttttaat 198  Q
    |  || |||| ||||||||||||||    
T  19986811 ttcaaattaataaatatgttttaat 19986835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 11431497 - 11431419
Alignment:
Q  111 tttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaata 189  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||    
T  11431497 tttagtaaatatccctcaagctatttgttataaaataaaagtgggtctaagttaggaagttggtgcaagttaacaaata 11431419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 24082148 - 24082066
Alignment:
Q  84 tgtaaaccaattta-aagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttag 165  Q
    |||||| ||||||| |||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||| | |||||||    
T  24082148 tgtaaatcaatttataagtaaaagatagtttagtaaatgtccctcaagctatttgttataaaataaaagtgggaccaagttag 24082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 14217748 - 14217784
Alignment:
Q  84 tgtaaaccaatttaaagtaagagataatttagtaaat 120  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14217748 tgtaaaccaatttaaagtaagagataattttgtaaat 14217784  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 17315510 - 17315547
Alignment:
Q  128 aagctatttgttataaaataaaagtgggtctaagttag 165  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  17315510 aagctatttgtaataaaataaaagtgggtctaaattag 17315547  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 14485772 - 14485646
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  |||||| |||  ||||||||||||||||||||| |||||| |||||||||||| |    
T  14485772 aatatccactaatgtaaaccaatttaaagtaagggatagtttaccaaatatccctggagctatttgttataaaataaatgtgggtataagttagcaaaat 14485673  T
Q  172 ggtgtaatttaacaaatatgttttaat 198  Q
    |||| || |||||||||||| ||||||    
T  14485672 ggtgcaagttaacaaatatgctttaat 14485646  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 18297654 - 18297527
Alignment:
Q  71 taatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaat 170  Q
    |||||||||||  | ||||||||||||||||||| |||||||||||||||||  ||||||||||||||  ||| |||||||||||| |||||||| |||     
T  18297654 taatatccactggtataaaccaatttaaagtaagggataatttagtaaatatctctcaagctatttgtattaagataaaagtgggtgtaagttagaaaag 18297555  T
Q  171 tggtgtaatttaacaaatatgttttaat 198  Q
    ||||| || ||||||||||| |||||||    
T  18297554 tggtgcaagttaacaaatatattttaat 18297527  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 13281961 - 13281859
Alignment:
Q  72 aatatccactaatgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaatt 171  Q
    ||||||||||  |||||||||||||||| |||| |||| |||||||||||| ||||||| |||||| |||||||||||||||| |||||||||| |||||    
T  13281961 aatatccacttgtgtaaaccaatttaaactaagggatagtttagtaaatatccctcaagttatttggtataaaataaaagtggatctaagttagaaaatt 13281862  T
Q  172 ggt 174  Q
    |||    
T  13281861 ggt 13281859  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 14188424 - 14188478
Alignment:
Q  134 tttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaat 188  Q
    ||||| ||||||||||||||||||||||||||||||||| || || |||||||||    
T  14188424 tttgtaataaaataaaagtgggtctaagttagcaaattgatgcaaattaacaaat 14188478  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 17794861 - 17794915
Alignment:
Q  144 aataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||| ||||||||||||||||||||| || ||||||| |||||||||||    
T  17794861 aataaaagtgagtctaagttagcaaattggtgcaagttaacaattatgttttaat 17794915  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 13281825 - 13281760
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtc-taagttagcaaattggtgtaatttaacaaat 188  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| || |||||||||    
T  13281825 cctcaagctatttgtaataaaataagagtgggtcttaagttagcaaatttgtgcaagttaacaaat 13281760  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 41618166 - 41618117
Alignment:
Q  123 tcctcaagctatttgttataaaat-aaaagtgggtctaagttagcaaatt 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  41618166 tcctcaagctatttgttataaaataaaaagtgggtctaagttagtaaatt 41618117  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 14485627 - 14485559
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgt 192  Q
    |||||| |||||||| | ||||||||||||| | ||||||||||||||| || || |||||||||||||    
T  14485627 cctcaatctatttgtaacaaaataaaagtggatttaagttagcaaattgatgcaagttaacaaatatgt 14485559  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 27295762 - 27295690
Alignment:
Q  124 cctcaagctatttgttataaaataaaagtgggtctaa-gttagcaaattggtgtaatttaacaaatatgtttt 195  Q
    |||||| ||||||||| ||||||||||| || || || ||| |||| ||||||||| ||||||||||| ||||    
T  27295762 cctcaaactatttgttttaaaataaaagaggatcaaaggttggcaatttggtgtaagttaacaaatatatttt 27295690  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 30850702 - 30850587
Alignment:
Q  84 tgtaaaccaatttaaagtaagagataatttagtaaatattcctcaagctatttgttataaaat-aaaagtgggtctaagttagcaaattggtgtaattta 182  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||| ||||| ||||||||||||||||||| ||  || |||    
T  30850702 tgtaaaccaatttaaagtaagagatagtttagtaaatatctctcaaactatttgttataaaataaaaagcgggtctaagttagcaaatttgtacaagtta 30850603  T
Q  183 acaaatatgttttaat 198  Q
    ||||||||||||||||    
T  30850602 acaaatatgttttaat 30850587  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 19544351 - 19544279
Alignment:
Q  126 tcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  19544351 tcaagatatttgttataaaataaaagtggatctaagttagcaaattggtgcaagttaacaaatatgttttaat 19544279  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 6455865 - 6455778
Alignment:
Q  111 tttagtaaatattcctcaagctatttgttataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||| | |||| ||||||||||||||||||||||  |||||||||| |||||||||  || ||| |||||||||||||||    
T  6455865 tttagtaaatatccatcaaactatttgttataaaataaaagtcagtctaagttaacaaattggtacaagttagcaaatatgttttaat 6455778  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 316971 - 316913
Alignment:
Q  140 ataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    ||||||||||||||||||||||||||||||||  || || |||||| ||||||||||||    
T  316971 ataaaataaaagtgggtctaagttagcaaattattgcaagttaacagatatgttttaat 316913  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 6455755 - 6455693
Alignment:
Q  128 aagctatttgttataaaataaaagtgggtctaagtt-agcaaattggtgtaatttaacaaata 189  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||| || ||||||||||    
T  6455755 aagctatttgtaataaaataaaagtaggtctaagttaagcaaattggtgcaagttaacaaata 6455693  T

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Target: scaffold1554 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 1455 - 1513
Alignment:
Q  140 ataaaataaaagtgggtctaagttagcaaattggtgtaatttaacaaatatgttttaat 198  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1455 ataaaataaaagtgggtctaagttagtaaattggtgtaagttaacaaatatgttttaat 1513  T

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