View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_3 (Length: 568)
Name: NF4105_low_3
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Complemental strand, 680542 - 679984
Alignment:
| Q |
9 |
cagaacctgtgttgaactttccttatcgcaaatacttgaattatgtcatgaacttggaagtgatttatatttcaaatttgcttatattttttaaaacggg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
680542 |
cagaacttgtgttgaactttccttatcgcaaatacttgaattatgtcatgaacttggaagtgatttatatttcaaatttgcttatattttttaaaacggg |
680443 |
T |
|
| Q |
109 |
gagtgattttgtgtggaaacatagaaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatcta |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
680442 |
gagtgattttgtgtgggaacatagaaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatcta |
680343 |
T |
|
| Q |
209 |
aaaatgaatnnnnnnnnngaaaga----------aagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgt |
298 |
Q |
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| T |
680342 |
aaaatgaataaataaaaaaaaaaaaaaaaagaagaagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgt |
680243 |
T |
|
| Q |
299 |
taggaaataaaccccaccatattctcaaacctttaaacnnnnnnncaacc------gttgttgttctgctgcattgaatgaccctcaaatataccattgg |
392 |
Q |
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| T |
680242 |
taggaaataaaccccaccatattctcaaacctttaaacaaaaaaacaaccgttgttgttgttgttctgctgcattgaatgaccctcaaatataccattgg |
680143 |
T |
|
| Q |
393 |
gaactcaaaccctagttttgtagagaaatggcggatggtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacat |
492 |
Q |
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| T |
680142 |
gaactcaaaccctagttttgtagagaaatggcggatggtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacat |
680043 |
T |
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| Q |
493 |
ctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggttt |
551 |
Q |
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| T |
680042 |
ctccgccaccacttcccactcttctcttcgatgtcctccctgagattctcggtaggttt |
679984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 233 - 548
Target Start/End: Complemental strand, 748234 - 747910
Alignment:
| Q |
233 |
aagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccacca------------tat |
320 |
Q |
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| T |
748234 |
aagaattatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttagcaaataaaccccaccagaaaaaaaaatatat |
748135 |
T |
|
| Q |
321 |
tctcaaacctttaaacnnnnnnncaaccgttgttgtt---ctgctgcattgaatgaccctcaaatataccattgggaactcaaaccctagttttgtagag |
417 |
Q |
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| T |
748134 |
tctaaaacctttaaaaaaa-----aaccgttgttgttgttctgctgcattgaatgaccctcaaatataccatcga-aactcaaaccctaattttgtagag |
748041 |
T |
|
| Q |
418 |
aaatggcggatggtagaagcgatggggaggaagacccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttct |
517 |
Q |
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| T |
748040 |
aaatggcggagggtagaagcgatgaggaggaagatccaaacgacatcatcgtccatacggctggaaccataacatctccgccgccacttcccactcttcc |
747941 |
T |
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| Q |
518 |
cttcgatgtcctccctgagattctcggtagg |
548 |
Q |
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|||||||| |||||||| ||||||||||| |
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| T |
747940 |
attcgatgttttccctgagtttctcggtagg |
747910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 2466333 - 2466411
Alignment:
| Q |
50 |
tatgtcatgaacttggaagtgatttatatttcaaatttgcttatattttttaaaacggggagtgattttgtgtggaaacat |
130 |
Q |
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| T |
2466333 |
tatgtcatgaacttggaagtgttttatatttgaaatttgct--tgttttctaaaacggggagtgattttgtgtgggaacat |
2466411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 2630430 - 2630503
Alignment:
| Q |
376 |
ctcaaatataccattgggaactcaaaccctagttttgtagagaaatggcggatggtagaagcgatggggaggaaga |
451 |
Q |
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| T |
2630430 |
ctcaaatataccatttagaattcaaaccctaatttt--agagaaatggcggagggtagaagcgacggggaagaaga |
2630503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 2634861 - 2634905
Alignment:
| Q |
482 |
aaccataacatctccgccgccacttcccactcttctcttcgatgt |
526 |
Q |
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| T |
2634861 |
aaccataacatctccgccgccacttccgactcttccgttcgatgt |
2634905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 542
Target Start/End: Complemental strand, 7443823 - 7443785
Alignment:
| Q |
504 |
cttcccactcttctcttcgatgtcctccctgagattctc |
542 |
Q |
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| T |
7443823 |
cttcccactcttcccttcgatctcctccctgagattctc |
7443785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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