View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4105_low_5 (Length: 463)

Name: NF4105_low_5
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4105_low_5
NF4105_low_5
[»] chr1 (7 HSPs)
chr1 (69-458)||(13043004-13043391)
chr1 (69-334)||(13047889-13048139)
chr1 (69-334)||(13052886-13053136)
chr1 (346-463)||(13048585-13048702)
chr1 (346-463)||(13053582-13053699)
chr1 (414-463)||(48083499-48083549)
chr1 (435-463)||(46412720-46412748)
[»] chr5 (3 HSPs)
chr5 (414-463)||(26045260-26045310)
chr5 (414-463)||(33075160-33075210)
chr5 (424-463)||(37067617-37067657)
[»] scaffold0149 (1 HSPs)
scaffold0149 (415-463)||(24701-24750)
[»] chr3 (6 HSPs)
chr3 (419-459)||(41743590-41743631)
chr3 (414-463)||(331893-331943)
chr3 (414-463)||(10872767-10872817)
chr3 (414-463)||(22496946-22496996)
chr3 (410-463)||(27224675-27224729)
chr3 (414-462)||(7882276-7882325)
[»] chr6 (3 HSPs)
chr6 (413-463)||(8449671-8449722)
chr6 (413-463)||(8458475-8458526)
chr6 (414-463)||(18886303-18886353)
[»] chr7 (2 HSPs)
chr7 (414-463)||(10095714-10095764)
chr7 (423-463)||(3882811-3882852)
[»] chr4 (3 HSPs)
chr4 (414-463)||(3669551-3669601)
chr4 (414-463)||(24798222-24798272)
chr4 (435-463)||(52914093-52914121)
[»] chr2 (1 HSPs)
chr2 (413-462)||(23378038-23378088)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 69 - 458
Target Start/End: Original strand, 13043004 - 13043391
Alignment:
Q  69 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttacccattggtgaattatgatgttgtgagtttctttggattttgagaagct 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13043004 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaactttacccattggtgaattatgatgttgtgagtttctttggattttgagaagct 13043103  T
Q  169 ttgggattttgctgtgcatggtagagaatttaaaggttgtgttggtgatggctttctgaaaaacattgagaaggaaaacaagagaaggagggagagagat 268  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  13043104 ttgggattttgttgtgcatggtagagaatttaaaggttgagttggtgatggctttctgaaaaacattgagaagaaaaaaaagagaaggagggagagagat 13043203  T
Q  269 gtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatgatatttctattgtttttgttgataaacttaaaaca 368  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  13043204 gtaggagatgaatgattgcatgtacgactttgaagaggtctttagttggatattatatatacatgatatttcta--attttttttgataaacttaaaaca 13043301  T
Q  369 aacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagcaaaaattaatattttagatt 458  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13043302 aacactctcaaacaacatataatttagaatagataggttagtacttacaccctctggtcactattaaagcaaaaattaatattttagatt 13043391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 69 - 334
Target Start/End: Original strand, 13047889 - 13048139
Alignment:
Q  69 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttacccattggtgaattatgatgttgtgagtttctttggattttgagaagct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||| ||||||||||||    
T  13047889 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttacccattggtga---------------gtttctttggtttttgagaagct 13047973  T
Q  169 ttgggattttgctgtgcatggtagagaatttaaaggttgtgttggtgatggctttctgaaaaacattgagaaggaaaacaagagaaggagggagagagat 268  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13047974 ttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgagaaggaaaaaaagagaaggagggagagagat 13048073  T
Q  269 gtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatga 334  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13048074 gtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatga 13048139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 69 - 334
Target Start/End: Original strand, 13052886 - 13053136
Alignment:
Q  69 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttacccattggtgaattatgatgttgtgagtttctttggattttgagaagct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||| ||||||||||||    
T  13052886 acatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttacccattggtga---------------gtttctttggtttttgagaagct 13052970  T
Q  169 ttgggattttgctgtgcatggtagagaatttaaaggttgtgttggtgatggctttctgaaaaacattgagaaggaaaacaagagaaggagggagagagat 268  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13052971 ttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgagaaggaaaaaaagagaaggagggagagagat 13053070  T
Q  269 gtaggagatgaatgattgcatgtacgactttgaagaggtctttatttggatattatatatacatga 334  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13053071 gtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatga 13053136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 463
Target Start/End: Original strand, 13048585 - 13048702
Alignment:
Q  346 tttttgttgataaacttaaaacaaacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagcaaaaatt 445  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  13048585 ttttttttgataaacttaaaacaaacacactcaaacaacatataatttagaatggataagttaatacttacaccctttggtcactattaaagcaaaaatt 13048684  T
Q  446 aatattttagattcattc 463  Q
    ||||||||||||||||||    
T  13048685 aatattttagattcattc 13048702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 346 - 463
Target Start/End: Original strand, 13053582 - 13053699
Alignment:
Q  346 tttttgttgataaacttaaaacaaacacactcaaacaacatataatttagaacagataggttagtacttacaccctctggttactattaaagcaaaaatt 445  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  13053582 ttttttttgataaacttaaaacaaacacactcaaacaacatataatttagaatggataagttaatacttacaccctttggtcactattaaagcaaaaatt 13053681  T
Q  446 aatattttagattcattc 463  Q
    ||||||||||||||||||    
T  13053682 aatattttagattcattc 13053699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 48083499 - 48083549
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  48083499 tacaccctctggtcactattataagcaaaaattaatattttaggttcattc 48083549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 435 - 463
Target Start/End: Original strand, 46412720 - 46412748
Alignment:
Q  435 aagcaaaaattaatattttagattcattc 463  Q
    |||||||||||||||||||||||||||||    
T  46412720 aagcaaaaattaatattttagattcattc 46412748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 26045260 - 26045310
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  26045260 tacaccctccggttactattataagcaaaaatttatattttagattcattc 26045310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 33075210 - 33075160
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    |||||| |||||| ||||||| ||||||||||||||||||||| |||||||    
T  33075210 tacaccatctggtcactattataagcaaaaattaatattttaggttcattc 33075160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 424 - 463
Target Start/End: Original strand, 37067617 - 37067657
Alignment:
Q  424 ggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  37067617 ggttactattataaacaaaaattaatattttagattcattc 37067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 24750 - 24701
Alignment:
Q  415 acaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattc 24701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 41743590 - 41743631
Alignment:
Q  419 cctctggttactatta-aagcaaaaattaatattttagattc 459  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  41743590 cctctggttactattataagcaaaaattaatattttagattc 41743631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 331943 - 331893
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||    
T  331943 tacaccctccggtcactattataagcaaaaattaacattttagattcattc 331893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 10872817 - 10872767
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  10872817 tacaccctccggtcactattataagcaaaaatttatattttagattcattc 10872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 22496946 - 22496996
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||||||    
T  22496946 tacaccctccagtcactattataagcaaaaattaatattttagattcattc 22496996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 27224729 - 27224675
Alignment:
Q  410 tacttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||||||| ||||||||||| ||||||||||||  |||||||||| ||||    
T  27224729 tacttacaccctccggttactattataagcaaaaattagcattttagattgattc 27224675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 7882276 - 7882325
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcatt 462  Q
    ||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  7882276 tacaccctccggtcactattataagcaaaaattaacattttagattcatt 7882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 8449722 - 8449671
Alignment:
Q  413 ttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  8449722 ttacatcctccggtcactattataagcaaaaattaatattttagattcattc 8449671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 8458526 - 8458475
Alignment:
Q  413 ttacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||    
T  8458526 ttacatcctccggtcactattataagcaaaaattaatattttagattcattc 8458475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 18886303 - 18886353
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||||||    
T  18886303 tacaccctccagtcactattataagcaaaaattaatattttagattcattc 18886353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 10095714 - 10095764
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattc 10095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 3882811 - 3882852
Alignment:
Q  423 tggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  3882811 tggttactattataaacaaaaattaatattttagattcattc 3882852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 3669551 - 3669601
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||||||||||||    
T  3669551 tacaccctctggtcactattataagcaaatatttatattttagattcattc 3669601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 463
Target Start/End: Complemental strand, 24798272 - 24798222
Alignment:
Q  414 tacaccctctggttactatta-aagcaaaaattaatattttagattcattc 463  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||||    
T  24798272 tacactctctggtcactattataagcaaaaattaatattttaaattcattc 24798222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 435 - 463
Target Start/End: Complemental strand, 52914121 - 52914093
Alignment:
Q  435 aagcaaaaattaatattttagattcattc 463  Q
    |||||||||||||||||||||||||||||    
T  52914121 aagcaaaaattaatattttagattcattc 52914093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 23378088 - 23378038
Alignment:
Q  413 ttacaccctctggttactatta-aagcaaaaattaatattttagattcatt 462  Q
    |||||||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  23378088 ttacaccctccggtcattattataagcaaaaattaatattttagattcatt 23378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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