View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_6 (Length: 437)
Name: NF4105_low_6
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_6 |
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| [»] scaffold0258 (1 HSPs) |
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Alignment Details
Target: scaffold0258 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0258
Description:
Target: scaffold0258; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 11454 - 11865
Alignment:
| Q |
17 |
ttatatcttcaagattttaattcaattaatannnnnnnacaattttggactcagatctcatcaaatcatcaatggttccttcggattataagaagtgcaa |
116 |
Q |
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| T |
11454 |
ttatatcttcaagattttaattcaattaatatttttttacaattttggactcacatctcatcaaatcatcaatggttccttcggattataagaagtgcaa |
11553 |
T |
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| Q |
117 |
ctgccatttcaaactgcatctgtatctcgaaaatccatttcattgtcagaagctcatttgccaaatatcagctataaacaacttcagaaatgactcatac |
216 |
Q |
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| T |
11554 |
ctgccatttcaaactgcatctgtatctcgaaaatccatttcattgtcagaagctcatttgccaaatatcagctataaacaactacagaaatgactcatac |
11653 |
T |
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| Q |
217 |
aaatccgttgagaagacgagtgaactcttcagttcaatgaggatggacattgtaatcgaattttctgcagtgcttacaaaattgcgccgcttggaatttg |
316 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11654 |
aaatccattgagaagacgagtaaactcttcagttcaatgaggatggacattgtaatcgaattttctgcagtgcttacaaaattgtgccgcttggaatttg |
11753 |
T |
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| Q |
317 |
ttgtgcgcggacagaagagaaagatcagagctattggtacaatagattgtaagccggcaagtcttgtattttgttgatgtcttctaaggataactctctc |
416 |
Q |
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| T |
11754 |
ttgtgtgcgaacagaagagaaagatcagagctattggtacaatagattgtaagccggcaagtcttgtattttgttgatgtcttctaaggataactctctc |
11853 |
T |
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| Q |
417 |
tccagttgcttc |
428 |
Q |
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| T |
11854 |
tccaattgcttc |
11865 |
T |
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