View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_7 (Length: 433)
Name: NF4105_low_7
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 48422323 - 48422733
Alignment:
| Q |
19 |
gctactagtaatcctattcattctaaaaaggtttaaatacgtgg-gtgtacctattacaagcgagtacaaaaagactacctaatttataaggaaaatgaa |
117 |
Q |
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| T |
48422323 |
gctactagtaatcctattcattctaaaaaggtttaaatacgtgaagtgtacctattacaagcgagtacaaaaagactacctaatttataaggaaaatgaa |
48422422 |
T |
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| Q |
118 |
tcattgatctgtcatgagtttaagcgcagctgcaacctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagata |
217 |
Q |
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| T |
48422423 |
tcattgatctgtcatgagtttaagcgcagctgcaacctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagata |
48422522 |
T |
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| Q |
218 |
ggggagggtcctaaaccattttagcaaaaactttaacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttatt |
317 |
Q |
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| T |
48422523 |
ggggagggtcctaaaccattttagcaaaaactttaacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttatt |
48422622 |
T |
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| Q |
318 |
tggaatatataatctaatgacgatattgacagcacttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttccca |
417 |
Q |
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| T |
48422623 |
tagaatatataatctaatgacgatattgacagcacttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttccca |
48422722 |
T |
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| Q |
418 |
caggttctgct |
428 |
Q |
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| T |
48422723 |
ctggttttgct |
48422733 |
T |
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