View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4105_low_8 (Length: 368)

Name: NF4105_low_8
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4105_low_8
NF4105_low_8
[»] chr4 (3 HSPs)
chr4 (18-322)||(38014349-38014642)
chr4 (18-76)||(12506436-12506494)
chr4 (16-76)||(29863424-29863484)
[»] chr2 (5 HSPs)
chr2 (77-350)||(31413063-31413335)
chr2 (19-94)||(24454516-24454592)
chr2 (18-76)||(10328955-10329013)
chr2 (18-76)||(23349043-23349101)
chr2 (18-76)||(18355376-18355434)
[»] chr3 (11 HSPs)
chr3 (25-92)||(47763960-47764028)
chr3 (18-76)||(24761961-24762019)
chr3 (18-76)||(24815915-24815973)
chr3 (18-76)||(2549937-2549995)
chr3 (18-76)||(53352824-53352882)
chr3 (18-76)||(31685077-31685135)
chr3 (18-76)||(53027815-53027873)
chr3 (15-76)||(17681764-17681825)
chr3 (18-76)||(37982349-37982407)
chr3 (18-76)||(53973349-53973407)
chr3 (18-76)||(12538698-12538756)
[»] chr8 (11 HSPs)
chr8 (18-76)||(24788096-24788154)
chr8 (15-76)||(27541621-27541682)
chr8 (12-76)||(23738651-23738715)
chr8 (18-76)||(31100935-31100993)
chr8 (18-76)||(5657771-5657829)
chr8 (35-92)||(5662583-5662641)
chr8 (18-76)||(14678084-14678142)
chr8 (18-72)||(24787162-24787218)
chr8 (18-76)||(8158461-8158519)
chr8 (308-341)||(2769789-2769822)
chr8 (18-63)||(33689370-33689415)
[»] scaffold0157 (1 HSPs)
scaffold0157 (18-76)||(13983-14041)
[»] scaffold0045 (1 HSPs)
scaffold0045 (18-76)||(11697-11755)
[»] scaffold0035 (1 HSPs)
scaffold0035 (18-76)||(35063-35121)
[»] chr7 (4 HSPs)
chr7 (18-76)||(1262088-1262146)
chr7 (18-76)||(26910044-26910102)
chr7 (18-76)||(48849870-48849928)
chr7 (18-76)||(43071445-43071503)
[»] chr5 (7 HSPs)
chr5 (17-76)||(19085440-19085499)
chr5 (18-76)||(22009591-22009649)
chr5 (24-92)||(22004502-22004571)
chr5 (18-76)||(7473552-7473610)
chr5 (18-76)||(9043802-9043860)
chr5 (19-76)||(30442610-30442667)
chr5 (18-77)||(30463112-30463172)
[»] scaffold0096 (1 HSPs)
scaffold0096 (18-76)||(27410-27468)
[»] chr6 (6 HSPs)
chr6 (18-76)||(3065698-3065756)
chr6 (25-76)||(33045494-33045545)
chr6 (18-72)||(10092512-10092566)
chr6 (18-76)||(16246702-16246760)
chr6 (19-76)||(4660238-4660295)
chr6 (25-72)||(30908436-30908483)
[»] scaffold0596 (1 HSPs)
scaffold0596 (18-76)||(654-712)
[»] chr1 (1 HSPs)
chr1 (22-76)||(50990911-50990965)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 38014349 - 38014642
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatct 117  Q
    ||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014349 atcatacttatatctaatccta--------tgctaatgactttacaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatct 38014440  T
Q  118 atttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttactgtt 217  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38014441 atttgggcgcctggaacatatcagccattgattgctttttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttattgtt 38014540  T
Q  218 atttgacttgcacggttcaaccacattggtttgaaattcaaatttcttctcttccatattccaatggtgcattaaatgtgtgtatcaaacccaatatgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  38014541 atttgacttgcacggttcaaccacattggtttgaaattcaaatttc--ctcttccatattccaatggcgcattaaatgtgtgtatcaaa-ccaatatgat 38014637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 12506436 - 12506494
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 12506494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 29863484 - 29863424
Alignment:
Q  16 tcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||||||||| | ||||||||    
T  29863484 tcatcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaaccta 29863424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 77 - 350
Target Start/End: Complemental strand, 31413335 - 31413063
Alignment:
Q  77 gatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattaca--cac 174  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||  |||    
T  31413335 gatttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacac 31413236  T
Q  175 atcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaattcaaatttcttctcttccat 274  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | | |||||||    
T  31413235 atcaatgctagatgttaatgctgggttaattgcatttactcttatttgacttgcacggttc-accacattggtttgaaattcaaattt-tccccttccat 31413138  T
Q  275 attccaatggtgcattaaatgtgtgtatcaaacccaatatgatatcttgctccacatgatcatatctttctcaaaa 350  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31413137 attccaatggtgcattaaatgtgtgtatcaaa-ccaatatgatatcttgctccacatgatcatatctttctcaaaa 31413063  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 24454516 - 24454592
Alignment:
Q  19 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctaga-tttttaggcgccaaac 94  Q
    |||||||||||||||||| || |||||||||||||   | ||||||| |||||||||| | ||||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaac 24454592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 10329013 - 10328955
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 10328955  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 23349101 - 23349043
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 23349043  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18355434 - 18355376
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||| ||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 18355376  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 47764028 - 47763960
Alignment:
Q  25 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctag-atttttaggcgccaa 92  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaa 47763960  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 24762019 - 24761961
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaaccta 24761961  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 24815915 - 24815973
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaaccta 24815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2549937 - 2549995
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 2549995  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 53352882 - 53352824
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaaccta 53352824  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31685077 - 31685135
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaaccta 31685135  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 53027873 - 53027815
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| |||| ||||||||||    
T  53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaaccta 53027815  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 17681764 - 17681825
Alignment:
Q  15 atcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||||||||||||||||||||| |  ||||||||| |||||| |||||||| ||||||||||    
T  17681764 atcatcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaaccta 17681825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37982349 - 37982407
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 37982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 53973407 - 53973349
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 53973349  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12538756 - 12538698
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||| || ||||||| |||||||| ||||||||||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaaccta 12538698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 24788154 - 24788096
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 24788096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 27541682 - 27541621
Alignment:
Q  15 atcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  27541682 atcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 27541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 23738651 - 23738715
Alignment:
Q  12 atcatcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  23738651 atcatcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta 23738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31100993 - 31100935
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 31100935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 5657771 - 5657829
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||| ||||||||||||||||||| ||||||||||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaaccta 5657829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 5662583 - 5662641
Alignment:
Q  35 tcctacttaacattgctaatgactttgcaaaacctaaacctaga-tttttaggcgccaa 92  Q
    ||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 5662641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 14678142 - 14678084
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| ||| ||||||||||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaaccta 14678084  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 24787218 - 24787162
Alignment:
Q  18 atcatacttatatctaatcctac--ttaacattgctaatgactttgcaaaacctaaa 72  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||||||| ||||||    
T  24787218 atcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaa 24787162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 8158461 - 8158519
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||  |  |||||| ||||||| || ||||||||||||||||||    
T  8158461 atcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaaccta 8158519  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 2769789 - 2769822
Alignment:
Q  308 ccaatatgatatcttgctccacatgatcatatct 341  Q
    |||||| |||||||||||||||||||||||||||    
T  2769789 ccaataagatatcttgctccacatgatcatatct 2769822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33689415 - 33689370
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgca 63  Q
    ||||||| ||||||||||| |  |||||||||||||||||||||||    
T  33689415 atcatacctatatctaatctttgttaacattgctaatgactttgca 33689370  T

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Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 14041 - 13983
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 13983  T

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Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11755 - 11697
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 11697  T

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Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 35063 - 35121
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 35121  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 1262088 - 1262146
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 1262146  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26910102 - 26910044
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  |||||||||||||| |||||||||| ||||||||||    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaaccta 26910044  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 48849928 - 48849870
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| ||| ||||||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaaccta 48849870  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 43071503 - 43071445
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 43071445  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 19085499 - 19085440
Alignment:
Q  17 catcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||||||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||    
T  19085499 catcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaaccta 19085440  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 22009649 - 22009591
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaaccta 22009591  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 22004571 - 22004502
Alignment:
Q  24 cttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctagat-ttttaggcgccaa 92  Q
    ||||||||||||| |  |||||||||||||||| |||||||| |||||||||||||  ||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaa 22004502  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7473610 - 7473552
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 7473552  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9043802 - 9043860
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 9043860  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 30442667 - 30442610
Alignment:
Q  19 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||| ||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 30442610  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 30463172 - 30463112
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaa-cctaaacctag 77  Q
    ||||||||||||||||||| |  |||||| ||||||| || |||||||| |||||||||||    
T  30463172 atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctag 30463112  T

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Target: scaffold0096 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27410 - 27468
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaaccta 27468  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 3065698 - 3065756
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  ||||||| ||||||||||||||||| ||||||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaaccta 3065756  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 33045545 - 33045494
Alignment:
Q  25 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 33045494  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 10092512 - 10092566
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaa 72  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||||||| ||||||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaa 10092566  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 16246702 - 16246760
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||||||| |  | ||||||||||||||||||||||| ||||| ||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatccta 16246760  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 4660295 - 4660238
Alignment:
Q  19 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta 4660238  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 30908483 - 30908436
Alignment:
Q  25 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaa 72  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaa 30908436  T

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Target: scaffold0596 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 654 - 712
Alignment:
Q  18 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||| ||| |  ||||||||||||||||  ||||||| ||||||||||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaaccta 712  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 50990911 - 50990965
Alignment:
Q  22 tacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 76  Q
    ||||||||||||||| |  ||||||||||| || |||||||||| ||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaaccta 50990965  T

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