View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_high_6 (Length: 248)
Name: NF4106_high_6
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 49265349 - 49265160
Alignment:
| Q |
40 |
gtgtgcaggtcaaaagtgttcttaaaaaccgtaagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagc |
139 |
Q |
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| T |
49265349 |
gtgtgcaggtcaaaagtgttcttaaaaaccgtaagaactttatcaaattggttgaccctctacttcaaggtcgttgtccaatgggaggacttaaacaagc |
49265250 |
T |
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| Q |
140 |
agttgctattgctgcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccag |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49265249 |
agttgctattgcggcaatgtgtgtgcaaacacaagcttctgcaaggcctctcattggtgaaattgtggatgcacttacatacatgaccag |
49265160 |
T |
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