View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_high_9 (Length: 227)
Name: NF4106_high_9
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 52001969 - 52001758
Alignment:
| Q |
1 |
gaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcgacaacgatgatgattttgagatttgta |
100 |
Q |
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| T |
52001969 |
gaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcgacaacgatgatgattttgagatttgta |
52001870 |
T |
|
| Q |
101 |
ggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgtcacgcattcatagtgtttcagagaataaagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001869 |
ggaacgagtcatttattagaagtcagtacaagctatttaacaaagacactgcaaagagatttgcgtcacgcattcatagtgtttcagagaataaagaaaa |
52001770 |
T |
|
| Q |
201 |
agatgatgatgt |
212 |
Q |
| |
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|||||||||||| |
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| T |
52001769 |
agatgatgatgt |
52001758 |
T |
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