View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4106_low_1 (Length: 465)
Name: NF4106_low_1
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 13652297 - 13652742
Alignment:
| Q |
20 |
gtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652297 |
gtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttat |
13652396 |
T |
|
| Q |
120 |
tgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652397 |
tgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaa |
13652496 |
T |
|
| Q |
220 |
gaaagcattaataatacatttgaagcacttggagaagcgtacgattctgttagagtccaaaccttaaatgttgtgtcatcctatgcaaccattcacgagg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652497 |
gaaagcattaataatacatttgaagcatttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgtgtcatcctatgcaaccattcacgagg |
13652596 |
T |
|
| Q |
320 |
acatatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652597 |
acatatataattcagctaatgaaaaacacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
13652696 |
T |
|
| Q |
420 |
atacaaagatataaacctgaatgtgatgcaaactgcaccttgctct |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652697 |
atacaaagatataaacctgaatgtgatgcaaactgcaccttgctct |
13652742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 13659797 - 13660242
Alignment:
| Q |
20 |
gtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttat |
119 |
Q |
| |
|
||||||| ||| ||||||| |||| ||||||||||| |||| || | ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13659797 |
gtgttcataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttat |
13659896 |
T |
|
| Q |
120 |
tgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaa |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
13659897 |
tgaactcaaaggacgtactggtgcacttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaa |
13659996 |
T |
|
| Q |
220 |
gaaagcattaataatacatttgaagcacttggagaagcgtacgattctgttagagtccaaaccttaaatgttgtgtcatcctatgcaaccattcacgagg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||| |||| |||||| |||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13659997 |
gaaagcattaataatacatttgaagcacttggagaggcatatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgagg |
13660096 |
T |
|
| Q |
320 |
acatatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
419 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13660097 |
acatatataactctgctaatgaaaaacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
13660196 |
T |
|
| Q |
420 |
atacaaagatataaacctgaatgtgatgcaaactgcaccttgctct |
465 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13660197 |
atacaaagatataaaccagaatgtgatgcaaacttcaccttgctct |
13660242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 28608426 - 28608871
Alignment:
| Q |
20 |
gtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttat |
119 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||| | ||||||| | |||||||||||||||||| |||||||||| ||| ||||| ||||||||||| | |
|
|
| T |
28608426 |
gtgttcataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgt |
28608525 |
T |
|
| Q |
120 |
tgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaa |
219 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||||| || |||||| ||||| | |
|
|
| T |
28608526 |
tgaactcgttggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagtta |
28608625 |
T |
|
| Q |
220 |
gaaagcattaataatacatttgaagcacttggagaagcgtacgattctgttagagtccaaaccttaaatgttgtgtcatcctatgcaaccattcacgagg |
319 |
Q |
| |
|
||||| ||| |||||| |||||||||||| |||| || || ||| || | ||||| |||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
28608626 |
gaaagtattgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcacgaag |
28608725 |
T |
|
| Q |
320 |
acatatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
419 |
Q |
| |
|
||||||| |||| || ||| |||||||| |||||| ||||| ||||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| |
|
|
| T |
28608726 |
acatatacaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgc |
28608825 |
T |
|
| Q |
420 |
atacaaagatataaacctgaatgtgatgcaaactgcaccttgctct |
465 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
28608826 |
gttcaaagatataaacttgaatgtgatgcaaagtgcaccttgctct |
28608871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 438478 - 438033
Alignment:
| Q |
20 |
gtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttat |
119 |
Q |
| |
|
|||||||||||||||| || || |||| ||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
438478 |
gtgttcacaatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgt |
438379 |
T |
|
| Q |
120 |
tgaactcaaaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaa |
219 |
Q |
| |
|
|||| || |||||| ||||| ||||||||| |||||||||| || |||||| ||| ||||| ||||||||||||| |||||| ||||| | |
|
|
| T |
438378 |
tgaaatcgttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagtta |
438279 |
T |
|
| Q |
220 |
gaaagcattaataatacatttgaagcacttggagaagcgtacgattctgttagagtccaaaccttaaatgttgtgtcatcctatgcaaccattcacgagg |
319 |
Q |
| |
|
|||||||||| ||||| ||||||||| | ||| || || ||| || ||||||||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
438278 |
gaaagcattaccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaag |
438179 |
T |
|
| Q |
320 |
acatatataattcagctaatgaaaaacacacaagcatgattatccttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgc |
419 |
Q |
| |
|
| ||||| || || |||||||||||| ||||| ||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||| |
|
|
| T |
438178 |
atatatacaactcggctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgc |
438079 |
T |
|
| Q |
420 |
atacaaagatataaacctgaatgtgatgcaaactgcaccttgctct |
465 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
438078 |
atacaaagatataaacttgaatgtgatgcaaagtgcaccttgctct |
438033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University