View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_10 (Length: 246)
Name: NF4106_low_10
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41080605 - 41080850
Alignment:
| Q |
1 |
tgcaagaatcattgacctattgattcctgaataccaatttgtactaagagactctgatgttaacaaaagagcatacttgttcttttctgacttgaaaatg |
100 |
Q |
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| T |
41080605 |
tgcaagaatcattgacctattgattcctgaataccaatttgtactaagagactctgatgttaacaaaagagcatacttgttcttttctgacttgaaaatg |
41080704 |
T |
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| Q |
101 |
ttttgaataacgtctaatgagattagactagcactacaacccataccagataggttataagcttttatatcctctctcattctgtaatggttaatgattc |
200 |
Q |
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| T |
41080705 |
ttttgaataacgtctaatgagattagactagcactacaacccataccagataggttataagcttttatatcctctctcattttgtaatggttaatgattc |
41080804 |
T |
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| Q |
201 |
ttgaagttaaagaaggaacagaagagaataaagatacatttaccac |
246 |
Q |
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| T |
41080805 |
ttgaagttaaagaaggaacagaagagaataaagatacatttaccac |
41080850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 23078149 - 23078267
Alignment:
| Q |
31 |
ataccaatttgtactaagagactctgatgttaacaaaagagcatacttgttcttttctgacttgaaaatgttttgaataacgtctaatgagattagacta |
130 |
Q |
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| T |
23078149 |
ataccaatttggactaagagactctgatgtgaccaaaagtgctaacttgtttctttgtgatttgaaaatgtttttaacaatatctactgatataagacta |
23078248 |
T |
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| Q |
131 |
gcactacaacccataccag |
149 |
Q |
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| T |
23078249 |
gcactacaacccattccag |
23078267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 23073541 - 23073728
Alignment:
| Q |
31 |
ataccaatttgtactaagagactctgatgttaacaaaagagcatacttgttcttttctgacttgaaaatgttttgaataacgtctaatgagattagacta |
130 |
Q |
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| T |
23073541 |
ataccaatttggactaagagactctgatgtgaccaaaagtgctaacttatttctctgtgatttgaaaatgtttttaacaatatctaatgatataagactt |
23073640 |
T |
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| Q |
131 |
gcactacaacccataccagataggttataagcttttatatcctctctcattctgtaatggttaatgattcttgaagttaaagaaggaa |
218 |
Q |
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| T |
23073641 |
gcactacaacccattccggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgaagataaagaaggaa |
23073728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 23110820 - 23110707
Alignment:
| Q |
31 |
ataccaatttgtactaagagactctgatgttaacaaaagagcatacttgttcttttctgacttgaaaatgttttgaataacgtctaatgagattagacta |
130 |
Q |
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||||||||||| || ||||||||||||||| | |||||| || |||| || ||| ||| ||||||||||||| || || |||| ||| || |||||| |
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| T |
23110820 |
ataccaatttggacaaagagactctgatgtgaccaaaagtgctaacttatttctttgtgatttgaaaatgtttttaacaatatctagtgaaataagacta |
23110721 |
T |
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| Q |
131 |
gcactacaacccat |
144 |
Q |
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||||| |||||||| |
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| T |
23110720 |
gcactgcaacccat |
23110707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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