View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_11 (Length: 239)
Name: NF4106_low_11
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 27806052 - 27805843
Alignment:
| Q |
20 |
tagcattagaaccaaaagaattaacaagatcagcaaaaaaccgaagaaacagtggcaaagaacaaccatgaacaacagctcctaaacttccaattatcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27806052 |
tagcattagaaccaaaagaattaacaagatcagcaaaaaaccgaagaaacagtggcaaagaacaaccatgaacaacagctcctaaacttccaattatcat |
27805953 |
T |
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| Q |
120 |
aagaacataatctaacccatcagcaaatctgaaaagctcacaaaacccaacagaagcaacattcttaaccttctcatttccattagaaacatcacaactt |
219 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27805952 |
aagaacataatccaatccatcagcaaatctgaaaagctcacaaaacccaacagaagcaacattcttaaccttctcatttccattagaaacatcacaactt |
27805853 |
T |
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| Q |
220 |
ttgtcctttg |
229 |
Q |
| |
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|||||||||| |
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| T |
27805852 |
ttgtcctttg |
27805843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 41179731 - 41179905
Alignment:
| Q |
20 |
tagcattagaaccaaaagaattaacaagatcagcaaaaaaccgaagaaacagtggcaaagaacaaccatgaacaacagctcctaaacttccaattatcat |
119 |
Q |
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||||||| ||||||||||| ||||||||||||||||| || | |||||| || ||||| |||||||||||||||| ||||| | |||||||| |||| |
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| T |
41179731 |
tagcattggaaccaaaagagttaacaagatcagcaaagaatctaagaaaaagaggcaaggaacaaccatgaacaattgctccaacggttccaattgtcat |
41179830 |
T |
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| Q |
120 |
aagaacataatctaacccatcagcaaatctgaaaagctcacaaaacccaacagaagcaacattcttaaccttctc |
194 |
Q |
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| T |
41179831 |
taaaatataatccaacccatcagcaaatctaaaaagttctccaaacccaacagcaggagcactcttaaccttctc |
41179905 |
T |
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