View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_2 (Length: 399)
Name: NF4106_low_2
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 40221291 - 40221661
Alignment:
| Q |
19 |
gccagtaacatgatttgttcttcagcttgtactttagcagcagcacaacaagtagatggcaatgcagcagaatttgtgaatggttttaagggacaagatc |
118 |
Q |
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| T |
40221291 |
gccagtaacatgatttgttcttcagcttgtactttagcagcagcacaacaagtagatggcaatgcagcagaatttgtgaatggttttaagggacaagatc |
40221390 |
T |
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| Q |
119 |
ttgagatggtggtagaagcagaacgtgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactggtctatggtcagagaattttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221391 |
ttgagatggtggtagaagcagaacgtgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactggtctatggtcagagaattttga |
40221490 |
T |
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| Q |
219 |
ctctcctctaacatacattttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaatattaattaaaagatatcaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221491 |
ctctcctctaacatacattttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaatattaattaaaagatatcaaat |
40221590 |
T |
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| Q |
319 |
tttaatagctttcgtaatgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221591 |
tttaatagctttcgtaatgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttg |
40221661 |
T |
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