View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_3 (Length: 360)
Name: NF4106_low_3
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 16743389 - 16743724
Alignment:
| Q |
11 |
cacagactgaataaccgtacaaccttcatgttgaataaaatgttgaaataaaaatttgaaattttcccttcatttagacttaatacggaccttat----- |
105 |
Q |
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| T |
16743389 |
cacaggctgaataaccgtacaaccttcatgttcaataaaatgttgaaataaaaatttgaaattttcccttcatttagacttaatatggaccttatattat |
16743488 |
T |
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| Q |
106 |
atgaagaaaacaacaaaatattgatgaattttggccccaatggaaaaaaggtcttttgtcacacatcatagaaccattaaatgtgtttgatgcttttggg |
205 |
Q |
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| T |
16743489 |
atgaagaaaacaacaaaatattgatgaattttggccccaatggaaaaaaggtcttttgtcacacatcatagaaccattaaatgtgtttgatgcttttggg |
16743588 |
T |
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| Q |
206 |
ggaaaaattattttcaagatacatacataaaccctattttctcatctatgtaataagctctcaaccaacctagagaccgatatctattgtttgtaccata |
305 |
Q |
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| T |
16743589 |
ggaaaaattattttcaagatacatacataaaccctattttcccatctatgtaataagctctcaaccaacctagagaccg--ttctcttgtttgtaccata |
16743686 |
T |
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| Q |
306 |
tactagacatgatgttccaaattctaacccgtcaatgt |
343 |
Q |
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| T |
16743687 |
aactagacatgatgttcaaaattctaacccatcaatgt |
16743724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 343
Target Start/End: Original strand, 16725426 - 16725596
Alignment:
| Q |
177 |
aaccattaaatgtgtttgatgcttttgggggaaaaattattttcaagatacatacataaaccctattttctcatctatgta---ataagctct-caacca |
272 |
Q |
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| T |
16725426 |
aaccattaaatgtgtttgatgcttttgggaaaaatattcttttcaagatacatacataaaccctattttcccatctatacatgtataagctttccaacca |
16725525 |
T |
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| Q |
273 |
acctagagaccgatatctattgtttgtaccatatactagacatgatgttccaaattctaacccgtcaatgt |
343 |
Q |
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| T |
16725526 |
acctagagactgttatctcttgtttgtaccataaactagacatgatgttcaaaattctaacccgtcaatgt |
16725596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 16725324 - 16725407
Alignment:
| Q |
56 |
aaataaaaatttgaaattttcccttcattt-agacttaatacggaccttatatgaagaaaacaacaaaatattgatgaattttg |
138 |
Q |
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| T |
16725324 |
aaataaaaatttgaaattttcccttcattttagacttaatatggaccttaaatgaagaaaacaacaaaatattgatgaattttg |
16725407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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