View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_4 (Length: 352)
Name: NF4106_low_4
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 52001547 - 52001207
Alignment:
| Q |
1 |
tggacttgcttcgcttgatggtgtttctgatgcactaaaacaa-ggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaacta |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001547 |
tggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaacta |
52001448 |
T |
|
| Q |
100 |
cttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001447 |
cttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatat |
52001348 |
T |
|
| Q |
200 |
tagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctatttgaattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52001347 |
tagaggtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcctatttgaattt |
52001248 |
T |
|
| Q |
300 |
tgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
340 |
Q |
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| T |
52001247 |
tgtcattcaaatttgggtcgtgtgaagttacaaatcacagg |
52001207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 51988091 - 51988419
Alignment:
| Q |
6 |
ttgcttcgcttgatggtgtttctgatgcactaaaacaa-ggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttct |
104 |
Q |
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| T |
51988091 |
ttgcttcgcttgatagtgtttctgaagagctaaagcaaaggcttagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactacttct |
51988190 |
T |
|
| Q |
105 |
aagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagag |
204 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
51988191 |
tagtgggttttcaaatgtgattcggcttaaagattgcttctggttgacagaggaagaatttataaaatattttggaacattggacacttccatattagag |
51988290 |
T |
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| Q |
205 |
gtatgtttattgaatttaattgtttcacatatataatacttagtgtttcttgtagttttgctgcaattccacatttttatttcc-tatttgaattttgtc |
303 |
Q |
| |
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||||||| ||| |||||||||||| || |||| ||||| || ||||| || ||||| | ||||||||| ||||| ||||| |||| ||||||| | |
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| T |
51988291 |
gtatgttcattcaatttaattgttcagcagatattgtacttggtttttctagtgattttgttacaattccacctttttctttccaaatttcaattttgac |
51988390 |
T |
|
| Q |
304 |
attcaaatttgggtcgtgtgaagttacaa |
332 |
Q |
| |
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||| ||||||||| ||||||||| |||| |
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| T |
51988391 |
atttgaatttgggttgtgtgaagtcacaa |
51988419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 52011403 - 52011202
Alignment:
| Q |
10 |
ttcgcttgatggtgtttctgatgcactaaaacaa-ggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagt |
108 |
Q |
| |
|
|||||||||||||||||| |||| || |||||| |||||||||||||| | |||||||| |||||||||||| || || ||||||||||||||| ||| |
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| T |
52011403 |
ttcgcttgatggtgtttcggatgagctcaaacaaaggcttagcgcgttggtatgtgattcgagaaaaatgaattgtcgctttcttgaactacttctgagt |
52011304 |
T |
|
| Q |
109 |
ggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
208 |
Q |
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|| ||||| | | |||||||||||||||||||| ||| |||||||||||||||| || |||| |||||||| |||||||| ||||||||||||||||| |
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| T |
52011303 |
gggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
|
| Q |
209 |
gt |
210 |
Q |
| |
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|| |
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|
| T |
52011203 |
gt |
52011202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 11749179 - 11749011
Alignment:
| Q |
42 |
aaggcttagcgcgttgctttgtgattcaagaaaaatgaatgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaagattgc |
141 |
Q |
| |
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||||||| | ||||||||||| |||||| ||||||||||||||| || ||||||| ||||||||||||| | ||| | | || |||||||||| ||| |
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| T |
11749179 |
aaggctttgtgcgttgctttgcgattcaggaaaaatgaatgctcgctttcttgaagtacttctaagtgggtctcctactcatgtttggcttaaagactgc |
11749080 |
T |
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| Q |
142 |
tcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtatgt |
210 |
Q |
| |
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|| ||| ||||| |||||||||| || |||||||||| |||||||| ||||| ||||||||||| |
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| T |
11749079 |
tcctggttgacataggaagaattcactgcatattttggagtgttggacacttccacggtagaggtatgt |
11749011 |
T |
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