View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_5 (Length: 297)
Name: NF4106_low_5
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_5 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 234
Target Start/End: Complemental strand, 16605 - 16401
Alignment:
| Q |
30 |
gaaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatat |
129 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16605 |
gaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatat |
16506 |
T |
|
| Q |
130 |
gatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataattta |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16505 |
gatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataatgta |
16406 |
T |
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| Q |
230 |
aaaag |
234 |
Q |
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||||| |
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| T |
16405 |
aaaag |
16401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 16411 - 16379
Alignment:
| Q |
235 |
aatgtaaaaagtaaacatataaattaatccatt |
267 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16411 |
aatgtaaaaagtaaacatataaattaatccatt |
16379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 11798008 - 11797814
Alignment:
| Q |
26 |
caatgaaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttag |
125 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||| |
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| T |
11798008 |
caatgaaagcaccaaagagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttag |
11797909 |
T |
|
| Q |
126 |
atatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat |
220 |
Q |
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| T |
11797908 |
atatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcat |
11797814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 11779146 - 11778983
Alignment:
| Q |
26 |
caatgaaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttag |
125 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
11779146 |
caatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttag |
11779047 |
T |
|
| Q |
126 |
atatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaa |
189 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||||||||| |
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| T |
11779046 |
atatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaa |
11778983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 11701959 - 11701757
Alignment:
| Q |
31 |
aaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatg |
130 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
11701959 |
aaagcacctaagagaggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatg |
11701860 |
T |
|
| Q |
131 |
atatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataatttaa |
230 |
Q |
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||||||| || || | ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
11701859 |
atatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatcaccatttaa |
11701760 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
|
||| |
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|
| T |
11701759 |
aaa |
11701757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 11676066 - 11675880
Alignment:
| Q |
31 |
aaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatg |
130 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
11676066 |
aaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatg |
11675967 |
T |
|
| Q |
131 |
atatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
217 |
Q |
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|||||||||| || | ||||||| |||||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
11675966 |
atatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11675880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 11684345 - 11684159
Alignment:
| Q |
31 |
aaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatg |
130 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
11684345 |
aaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatg |
11684246 |
T |
|
| Q |
131 |
atatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
217 |
Q |
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|||||||||| || | ||||||| |||||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
11684245 |
atatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11684159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 11696167 - 11695984
Alignment:
| Q |
26 |
caatgaaagcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagctgttgcagtgttttgtttgagtggtcctgttag |
125 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||| |||||||| |||||||||||||||||||||| |
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| T |
11696167 |
caatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttag |
11696068 |
T |
|
| Q |
126 |
atatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatt |
209 |
Q |
| |
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|||||||||||| || || | ||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||| ||| |||| |
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| T |
11696067 |
atatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
11695984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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