View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4106_low_6 (Length: 260)
Name: NF4106_low_6
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 49265509 - 49265761
Alignment:
| Q |
1 |
accactccatagctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttcccactacttgtgtggata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265509 |
accactccatagctatacacatcagatttaatagttagttgtccggtcataagatattcaggggcacaataaccatatgttcccactacttgtgtggata |
49265608 |
T |
|
| Q |
101 |
catgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgataattttcaccgagaaggacgttggatgactttaagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265609 |
catgagtcatatcaccaattggtccaagttttgcgaacccaaaatctgataacttggcatcataattttcaccgagaaggacgttggatgactttaagtc |
49265708 |
T |
|
| Q |
201 |
tctatatatcacagggggatttgccttatgcatatattccaacccctttgcta |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49265709 |
tctatatatcacagggggatttgccttatgcatatattccaacccctttgcta |
49265761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 252
Target Start/End: Complemental strand, 6603745 - 6603523
Alignment:
| Q |
33 |
agttagttgtccggtcataagatattcaggggcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagtttt |
132 |
Q |
| |
|
||||||||| || |||||| ||| || ||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
6603745 |
agttagttgaccagtcatagcatactccggggcacaatagccatatgttcccattacacgtgtggatacatgagtcttatcaccaactggaccaagtttt |
6603646 |
T |
|
| Q |
133 |
gcaaacccaaaatctgataacttggcatgataattttcaccgagaaggacgttggatgactttaagtctctatatatcacagggggatttgcctt---at |
229 |
Q |
| |
|
|| | |||||||||||||||||||| |||| || |||| | || |||| ||| ||||| |||||||||||||| |||||||||||||||||||| || |
|
|
| T |
6603645 |
gccagcccaaaatctgataacttgggatgaaaaccttcatctaggaggatgttagatgattttaagtctctatagatcacagggggatttgccttgtcat |
6603546 |
T |
|
| Q |
230 |
gcatatattccaacccctttgct |
252 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
6603545 |
gcaagtattccaatccctttgct |
6603523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 40923910 - 40923808
Alignment:
| Q |
64 |
gcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgat |
163 |
Q |
| |
|
||||| || ||||||||||||| ||| ||| || ||||||||||||||||| ||||| || | |||||| || |||||||| |||||||||| ||||| |
|
|
| T |
40923910 |
gcacagtagccatatgttcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttgccaagccaaaatcggataacttgggatgat |
40923811 |
T |
|
| Q |
164 |
aat |
166 |
Q |
| |
|
||| |
|
|
| T |
40923810 |
aat |
40923808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 13172452 - 13172350
Alignment:
| Q |
64 |
gcacaataaccatatgttcccactacttgtgtggatacatgagtcatatcaccaattggtccaagttttgcaaacccaaaatctgataacttggcatgat |
163 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||| || ||||||||| ||||||||||||| || | |||||| || || ||||| |||||||||| ||||| |
|
|
| T |
13172452 |
gcacaatacccatatgttcccattacccttgttgacacatgagtcttatcaccaattggacctacttttgccaagccgaaatcagataacttgggatgat |
13172353 |
T |
|
| Q |
164 |
aat |
166 |
Q |
| |
|
||| |
|
|
| T |
13172352 |
aat |
13172350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 52960224 - 52960296
Alignment:
| Q |
13 |
ctatacacatcagattttatagttagttgtccggtcataagatattcaggggcacaataaccatatgttccca |
85 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||| ||||||||| ||||| |||||||| ||||||| |
|
|
| T |
52960224 |
ctatatacatctgattttacagttagttgtccagtcatagcatattcaggagcacagtaaccataagttccca |
52960296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University