View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4106_low_8 (Length: 249)
Name: NF4106_low_8
Description: NF4106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4106_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 44068992 - 44069215
Alignment:
| Q |
26 |
caataatctatataaatgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaa |
125 |
Q |
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| T |
44068992 |
caataatctatataaatgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaa |
44069091 |
T |
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| Q |
126 |
caatagtagaatccattccatctccaaatatcattaaatttgacactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataac |
225 |
Q |
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| T |
44069092 |
cactagtagaatccattccatctccaaatatcattaaatttgacactgtgcttttgatatcaatattctctttataaatacctgctttcagatgaataac |
44069191 |
T |
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| Q |
226 |
cactctcccttttccactaagctt |
249 |
Q |
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|||||||||||||||||||||||| |
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| T |
44069192 |
cactctcccttttccactaagctt |
44069215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 44086210 - 44085987
Alignment:
| Q |
26 |
caataatctatataaatgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaa |
125 |
Q |
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| T |
44086210 |
caataatctatataaatgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaa |
44086111 |
T |
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| Q |
126 |
caatagtagaatccattccatctccaaatatcattaaatttgacactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataac |
225 |
Q |
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| T |
44086110 |
caatagtagaatccattccatctccaaatatcattaaatttgacattgtccttttgatatcgatattctctttataaacacctgctttcagatgaataac |
44086011 |
T |
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| Q |
226 |
cactctcccttttccactaagctt |
249 |
Q |
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| T |
44086010 |
cactctccctttcccactaagctt |
44085987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 44094256 - 44094464
Alignment:
| Q |
41 |
atgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaacaatagtagaatcca |
140 |
Q |
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| T |
44094256 |
atgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcattatgattgccagtaacaatagtagaatcca |
44094355 |
T |
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| Q |
141 |
ttccatctccaaatatcattaaatttgacactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataaccactctcccttttcc |
240 |
Q |
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|||||||||| |||||||||||||| ||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44094356 |
ttccatctccgaatatcattaaattcttcactgtcttcttgatatcaacattctctttataaatacctgctttcagatgaataaccactctcccttttcc |
44094455 |
T |
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| Q |
241 |
actaagctt |
249 |
Q |
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||||||||| |
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| T |
44094456 |
actaagctt |
44094464 |
T |
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