View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4107_high_12 (Length: 309)

Name: NF4107_high_12
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4107_high_12
NF4107_high_12
[»] chr4 (3 HSPs)
chr4 (18-308)||(6029909-6030185)
chr4 (123-198)||(6037686-6037761)
chr4 (57-109)||(6030479-6030531)
[»] chr5 (12 HSPs)
chr5 (131-272)||(31475648-31475786)
chr5 (123-272)||(40843022-40843168)
chr5 (123-272)||(31284963-31285109)
chr5 (133-268)||(31279194-31279326)
chr5 (123-272)||(31505595-31505741)
chr5 (133-272)||(31407131-31407267)
chr5 (123-272)||(31281678-31281824)
chr5 (133-272)||(31643589-31643725)
chr5 (123-211)||(31332435-31332523)
chr5 (123-272)||(31317604-31317750)
chr5 (123-209)||(31381222-31381308)
chr5 (131-272)||(31396005-31396143)
[»] chr3 (1 HSPs)
chr3 (124-210)||(25708754-25708840)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 6029909 - 6030185
Alignment:
Q  18 ataggtcacaaaaatttgtgcaatatgtcgtatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaactccttc 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  6029909 ataggtcacaaaaatttgtgcaatatgtcatatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaact----- 6030003  T
Q  118 tgtttataactgaaatttaatcttcatgagtatcatagttagacatcc-gagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgt 216  Q
               ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6030004 -----------gaaatttaatcttcatgagtatcatagttagacatcctgagtaaaatgtaaagaagatccacttcgaatccgcactgagtttgcagtgt 6030092  T
Q  217 ggacaaactcattgacatgataagaaaggtagcacatgaaatgagactatatgcatgttttcca-ctactacgatggttaaatacttggaatt 308  Q
     ||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  6030093 cgacaaactcattgacatgataagaaaggtagaacatgaaagaggactatatgcatgttttccatctcctacgatggctaaatacttggaatt 6030185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 6037686 - 6037761
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatcc 198  Q
    ||||||| |||| |||| ||||||||| || ||||||||||| ||| |||||||||| ||||| ||||||||||||    
T  6037686 ataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatcc 6037761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 6030479 - 6030531
Alignment:
Q  57 aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta 109  Q
    ||||||||||||||||||||||||||||| ||| | | |||||| ||||||||    
T  6030479 aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgta 6030531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 31475648 - 31475786
Alignment:
Q  131 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 230  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||   || | || ||||||| ||    
T  31475648 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgagatt---gcctcgagaaactcagtg 31475744  T
Q  231 acatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||||||||  ||||| |||||| |||||||| ||||| ||||    
T  31475745 acatgatagcaaaggcagcacaagaaatgaggctataagcat 31475786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 40843022 - 40843168
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 222  Q
    ||||||| ||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| || |||| ||   || | |||||    
T  40843022 ataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatccacttcgaatccacaatgagatt---gcctcgacaa 40843118  T
Q  223 actcattgacatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||||| ||||||||||  ||||| |||||| |||||||| ||||| ||||    
T  40843119 actcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcat 40843168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 31285109 - 31284963
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 222  Q
    ||||||| ||||||||||||||||||  || | ||| ||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||  ||| |||||    
T  31285109 ataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgc--cgt-gacaa 31285013  T
Q  223 actcattgacatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||||||| ||||||||  ||||| ||||||||||||||| ||||||||||    
T  31285012 actcattaacatgatagaaaaggaagcacatgaaatgaggctatatgcat 31284963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 31279194 - 31279326
Alignment:
Q  133 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 232  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||   |||||||| | ||||    
T  31279194 tttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtttgccgc---gacaaactaagtgac 31279290  T
Q  233 atgataagaaaggtagcacatgaaatgagactatat 268  Q
    ||||||  ||||| ||||||||||||||| ||||||    
T  31279291 atgatagcaaaggaagcacatgaaatgaggctatat 31279326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 31505595 - 31505741
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 222  Q
    ||||||| |||||||||||||| |||   | | ||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| ||   |||||    
T  31505595 ataactgcaatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgc---gacaa 31505691  T
Q  223 actcattgacatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||| |  |||||||||  ||||| ||||| ||||||||| ||||||||||    
T  31505692 actgagcgacatgatagcaaaggaagcacttgaaatgaggctatatgcat 31505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 31407131 - 31407267
Alignment:
Q  133 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 232  Q
    ||||||||||||||||  |||| |||||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    | ||||| |||||||||    
T  31407131 tttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgcc---ttgacaagctcattgac 31407227  T
Q  233 atgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||||||  |||||  ||||||||||| |  ||||||||||    
T  31407228 atgatagcaaaggcggcacatgaaatcaagctatatgcat 31407267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 31281824 - 31281678
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 222  Q
    ||||||| ||||||| ||||||||||  || | ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||   || |  ||||    
T  31281824 ataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgagttt---gccttaacaa 31281728  T
Q  223 actcattgacatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||| | ||||||||||  |||||  ||||||||||| ||||| |||||||    
T  31281727 acttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcat 31281678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 31643589 - 31643725
Alignment:
Q  133 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 232  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| | ||| |||||||||| |||||   |||| |||||||| | ||||    
T  31643589 tttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagttt---gcgtcgacaaactaagtgac 31643685  T
Q  233 atgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||||||  ||||| |||||| |||||||| ||||||||||    
T  31643686 atgatagcaaaggaagcacaagaaatgaggctatatgcat 31643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 31332523 - 31332435
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgc 211  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||||    
T  31332523 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtttgc 31332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 31317750 - 31317604
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 222  Q
    ||||||| || |||||||||||||||   | | |||||||||| || ||||| ||||||||||| | ||| ||||| ||||||||||||    | |||||    
T  31317750 ataactgcaacttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgcc---ttgacaa 31317654  T
Q  223 actcattgacatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    ||| | |||||| |||  ||||| |||||||||||| | |||||||||||    
T  31317653 actaagtgacataatagcaaaggcagcacatgaaattaaactatatgcat 31317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 31381308 - 31381222
Alignment:
Q  123 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagttt 209  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||    
T  31381308 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagttt 31381222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 272
Target Start/End: Complemental strand, 31396143 - 31396005
Alignment:
Q  131 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 230  Q
    ||||||||||||||||||   | | ||| |||||||||  ||||||| | |||||||||||| ||||| |||||| |||||  ||   |||| || | ||    
T  31396143 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcg---acaagctaagtg 31396047  T
Q  231 acatgataagaaaggtagcacatgaaatgagactatatgcat 272  Q
    |||| |||  ||||| |||||||||||| |||||||||||||    
T  31396046 acatcatagaaaaggcagcacatgaaattagactatatgcat 31396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 25708840 - 25708754
Alignment:
Q  124 taactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttg 210  Q
    |||||| ||||| | ||||||||||  || | |||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagtttg 25708754  T

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