View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_high_13 (Length: 286)
Name: NF4107_high_13
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 6030479 - 6030742
Alignment:
| Q |
12 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
111 |
Q |
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| T |
6030479 |
aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgtacctctaccgacttctggttataaataatttgctaaagttctctagtg |
6030578 |
T |
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| Q |
112 |
tcttactgctatactatttttcaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc |
211 |
Q |
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| T |
6030579 |
tcttactgctact-tattttacaaaagtgaaggacaaagaaccagtaaattaatatgactacactggttgagactcacagtagacagcaatgaaaattgc |
6030677 |
T |
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| Q |
212 |
attactttcattgttttcctgccttctatgctactactgcatttacatcagtttcaaattctctg |
276 |
Q |
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| T |
6030678 |
attactttcattgttttccttccttctatgctactactgcatttacatcagtttcaaattctctg |
6030742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 5851976 - 5852043
Alignment:
| Q |
199 |
caatgaaaattgcattactttcattgttttcctgccttctatgctactactgcatttacatcagtttc |
266 |
Q |
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| T |
5851976 |
caatgagaattacattacttccattgttttccttcattctctgctactactgcatttatatcagtttc |
5852043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 5570099 - 5570141
Alignment:
| Q |
211 |
cattactttcattgttttcctgccttctatgctactactgcat |
253 |
Q |
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| T |
5570099 |
cattagtttcattgttttccttccttctatgctactactgcat |
5570141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 6029948 - 6030000
Alignment:
| Q |
12 |
aaaggttcctaataaatgtaacttttatggtatgaatttgtttggtgtttgta |
64 |
Q |
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|||||||||||||||||| |||||||||| ||| | |||||||| |||||||| |
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| T |
6029948 |
aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta |
6030000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 23268652 - 23268603
Alignment:
| Q |
206 |
aattgcattactttcattgttttcctgccttctatgctactactgcattt |
255 |
Q |
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|||| ||||||||||||||||||||| |||| | ||| |||||||||||| |
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| T |
23268652 |
aattacattactttcattgttttccttccttttctgccactactgcattt |
23268603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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