View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_high_16 (Length: 269)
Name: NF4107_high_16
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 33866714 - 33866479
Alignment:
| Q |
1 |
tcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866714 |
tcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttcat |
33866615 |
T |
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| Q |
101 |
atacccatgatttccgctgtcacggcaagttagaataattttttattcatggttgcataattaaagacttgcatgatttccttaccttgaaaccagcttt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33866614 |
atacccatgatttccgctgtcacggtaagttagaataattttttattcatggtt----------------gcatgatttccttaccttgaaaccagcttt |
33866531 |
T |
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| Q |
201 |
aaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866530 |
aaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
33866479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 44574087 - 44573971
Alignment:
| Q |
1 |
tcatcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttcat |
100 |
Q |
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||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||| |||||| | ||||| |
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| T |
44574087 |
tcatcatcatgtatgtcaagatggtttaatttgagagcagcggctgtttgcgtcgtctgctcactccggctagatggaaaacaagaactcctactttcat |
44573988 |
T |
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| Q |
101 |
atacccatgatttccgc |
117 |
Q |
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| T |
44573987 |
ctatacatgatttccgc |
44573971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 5771340 - 5771509
Alignment:
| Q |
3 |
atcatgatgtatgtcaaaatgatttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctagatggaaaacaatcactcctgccttcatat |
102 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5771340 |
atcatgatgtatgtcaagatggtttaatttgagagcagcagctgtctgcgacgtctgctcgctccggctaggtggaaaacaatcactcctgccttcatat |
5771439 |
T |
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| Q |
103 |
acccatgatttccgctgtcacggcaagttagaataattttttattcatggttgcataattaaagacttgc |
172 |
Q |
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| T |
5771440 |
acacatgatttccgctgtcacggcaagttagaacaattttttattcatggttgcataattaaagacttgc |
5771509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 23214315 - 23214436
Alignment:
| Q |
55 |
gtctgctcgctccggctagatggaaaacaatcactcctgccttcatatacccatgatttccgctgtcacggcaagttagaataattttttattcatggtt |
154 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
23214315 |
gtctgcttgctccggctagatggaaaacaatcactcctgccttcatatacacatgatttccgctgtcacggcaagttagaacaattctttattcatggtt |
23214414 |
T |
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| Q |
155 |
gcataattaaagacttgcatga |
176 |
Q |
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| T |
23214415 |
gcataattaaagacttgcatga |
23214436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 23216040 - 23216115
Alignment:
| Q |
177 |
tttccttaccttgaaaccagctttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
252 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23216040 |
tttccttaccttgaaaccagctttaaccagcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
23216115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 11075828 - 11075753
Alignment:
| Q |
177 |
tttccttaccttgaaaccagctttaaccatcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
252 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11075828 |
tttccttaccttgaaaccagctttaaccagcaatgatttattagttaaaggaaattgataacttcagcagcaaact |
11075753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 30746089 - 30746122
Alignment:
| Q |
219 |
agttaaaggaaattgataacttcagcagcaaact |
252 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
30746089 |
agttaaaggaaattgatatcttcagcagcaaact |
30746122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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