View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4107_high_18 (Length: 260)

Name: NF4107_high_18
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4107_high_18
NF4107_high_18
[»] chr5 (29 HSPs)
chr5 (1-236)||(30454201-30454436)
chr5 (1-236)||(30459259-30459494)
chr5 (1-236)||(30444829-30445064)
chr5 (1-238)||(24422230-24422467)
chr5 (1-238)||(18568991-18569229)
chr5 (1-238)||(24412781-24413018)
chr5 (1-238)||(22489138-22489375)
chr5 (1-237)||(4635898-4636134)
chr5 (51-238)||(42732575-42732761)
chr5 (1-238)||(13815371-13815605)
chr5 (10-229)||(24244050-24244267)
chr5 (10-229)||(24290674-24290891)
chr5 (48-238)||(33955498-33955687)
chr5 (48-238)||(11223376-11223564)
chr5 (48-238)||(20035999-20036188)
chr5 (48-204)||(22118134-22118291)
chr5 (62-221)||(5600591-5600749)
chr5 (62-221)||(5610237-5610395)
chr5 (48-232)||(20834431-20834614)
chr5 (62-221)||(31150651-31150809)
chr5 (71-238)||(26652642-26652808)
chr5 (71-238)||(26924227-26924393)
chr5 (155-236)||(22448330-22448411)
chr5 (155-238)||(37514857-37514940)
chr5 (180-236)||(22457666-22457722)
chr5 (166-221)||(16111002-16111058)
chr5 (159-223)||(718954-719018)
chr5 (159-223)||(727934-727998)
chr5 (159-223)||(6331671-6331735)
[»] chr4 (17 HSPs)
chr4 (1-238)||(26812461-26812698)
chr4 (1-238)||(26821928-26822165)
chr4 (1-238)||(3242285-3242522)
chr4 (1-238)||(54689911-54690148)
chr4 (1-238)||(54699342-54699579)
chr4 (1-238)||(37059039-37059276)
chr4 (1-238)||(3918019-3918256)
chr4 (1-237)||(15842897-15843133)
chr4 (48-238)||(20884447-20884636)
chr4 (48-238)||(50516496-50516685)
chr4 (48-238)||(11482315-11482504)
chr4 (62-221)||(23622930-23623088)
chr4 (66-238)||(18125410-18125579)
chr4 (66-128)||(16489947-16490010)
chr4 (180-238)||(28256097-28256155)
chr4 (159-223)||(112634-112698)
chr4 (159-223)||(14917028-14917092)
[»] chr6 (12 HSPs)
chr6 (1-238)||(23895614-23895851)
chr6 (1-238)||(18420504-18420741)
chr6 (50-238)||(14102308-14102497)
chr6 (48-238)||(22066293-22066482)
chr6 (48-234)||(23884492-23884677)
chr6 (70-236)||(10259779-10259945)
chr6 (49-238)||(17512221-17512408)
chr6 (76-236)||(11421451-11421611)
chr6 (96-238)||(12173469-12173610)
chr6 (50-213)||(23110242-23110405)
chr6 (62-177)||(12415075-12415190)
chr6 (59-149)||(13218363-13218453)
[»] chr3 (20 HSPs)
chr3 (1-238)||(24794544-24794781)
chr3 (1-238)||(28367651-28367888)
chr3 (1-238)||(28375469-28375706)
chr3 (1-238)||(28383291-28383528)
chr3 (1-238)||(28351718-28351955)
chr3 (1-237)||(38529176-38529412)
chr3 (1-238)||(4951547-4951783)
chr3 (48-233)||(5385690-5385874)
chr3 (48-236)||(13328278-13328465)
chr3 (48-238)||(23487041-23487232)
chr3 (48-238)||(46305572-46305760)
chr3 (62-221)||(17529877-17530035)
chr3 (62-221)||(32877881-32878039)
chr3 (62-221)||(54624666-54624824)
chr3 (62-221)||(48978681-48978835)
chr3 (62-221)||(48988221-48988375)
chr3 (50-238)||(7783987-7784194)
chr3 (95-221)||(19388809-19388936)
chr3 (66-238)||(4361514-4361683)
chr3 (155-199)||(24285493-24285537)
[»] scaffold0028 (3 HSPs)
scaffold0028 (1-238)||(94429-94666)
scaffold0028 (1-238)||(103870-104107)
scaffold0028 (159-223)||(82272-82336)
[»] scaffold0040 (2 HSPs)
scaffold0040 (1-238)||(30821-31058)
scaffold0040 (1-237)||(9998-10230)
[»] chr7 (16 HSPs)
chr7 (1-238)||(15174493-15174730)
chr7 (1-238)||(7592959-7593196)
chr7 (48-238)||(14634776-14634965)
chr7 (10-229)||(11634337-11634554)
chr7 (48-238)||(14644476-14644665)
chr7 (48-238)||(33292175-33292364)
chr7 (48-238)||(15947371-15947560)
chr7 (49-238)||(32817997-32818185)
chr7 (48-238)||(9736946-9737135)
chr7 (62-236)||(19352589-19352763)
chr7 (85-236)||(13874423-13874572)
chr7 (122-238)||(48710005-48710121)
chr7 (66-221)||(4306573-4306727)
chr7 (48-116)||(48711401-48711469)
chr7 (159-223)||(607218-607282)
chr7 (159-223)||(616313-616377)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-238)||(408281-408518)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-238)||(3486-3723)
[»] chr8 (25 HSPs)
chr8 (1-238)||(7789076-7789313)
chr8 (1-238)||(20714022-20714259)
chr8 (1-238)||(18143427-18143661)
chr8 (10-233)||(18883163-18883384)
chr8 (1-236)||(25051063-25051295)
chr8 (48-238)||(42712176-42712365)
chr8 (1-236)||(25037026-25037258)
chr8 (10-229)||(18232890-18233107)
chr8 (10-229)||(18242341-18242558)
chr8 (10-229)||(18251792-18252009)
chr8 (51-236)||(31575411-31575595)
chr8 (48-238)||(20030179-20030368)
chr8 (48-238)||(20044818-20045007)
chr8 (49-238)||(12925355-12925543)
chr8 (1-238)||(4843720-4843956)
chr8 (48-238)||(12767631-12767822)
chr8 (85-236)||(33592134-33592284)
chr8 (85-236)||(33601773-33601923)
chr8 (89-238)||(12915500-12915648)
chr8 (94-234)||(24096077-24096217)
chr8 (48-235)||(15833950-15834137)
chr8 (89-226)||(24634009-24634145)
chr8 (171-238)||(20714417-20714484)
chr8 (85-211)||(42896174-42896299)
chr8 (175-233)||(26194048-26194106)
[»] chr2 (13 HSPs)
chr2 (1-238)||(31710464-31710701)
chr2 (2-238)||(24022740-24022976)
chr2 (1-238)||(14273158-14273394)
chr2 (48-238)||(35877516-35877705)
chr2 (48-238)||(35885005-35885194)
chr2 (48-238)||(36724718-36724907)
chr2 (48-234)||(3396923-3397108)
chr2 (62-221)||(1800504-1800662)
chr2 (62-221)||(22632413-22632571)
chr2 (62-221)||(1791010-1791164)
chr2 (70-238)||(18578707-18578875)
chr2 (155-224)||(16446670-16446739)
chr2 (166-238)||(29911278-29911350)
[»] chr1 (11 HSPs)
chr1 (48-238)||(5378422-5378613)
chr1 (1-236)||(15809976-15810216)
chr1 (48-238)||(14272016-14272205)
chr1 (48-237)||(40999034-40999224)
chr1 (48-232)||(14281888-14282071)
chr1 (51-238)||(26906244-26906431)
chr1 (62-238)||(21633594-21633769)
chr1 (48-224)||(3470949-3471124)
chr1 (85-236)||(21919431-21919581)
chr1 (48-235)||(30676788-30676976)
chr1 (92-233)||(28310018-28310155)
[»] scaffold0010 (1 HSPs)
scaffold0010 (10-233)||(256921-257142)
[»] scaffold0206 (1 HSPs)
scaffold0206 (48-238)||(2109-2298)
[»] scaffold0021 (3 HSPs)
scaffold0021 (48-238)||(124047-124236)
scaffold0021 (51-221)||(99983-100152)
scaffold0021 (48-116)||(143169-143237)
[»] scaffold0269 (1 HSPs)
scaffold0269 (62-221)||(14830-14988)
[»] scaffold0247 (1 HSPs)
scaffold0247 (62-221)||(24604-24762)
[»] scaffold0334 (1 HSPs)
scaffold0334 (85-236)||(12548-12698)
[»] scaffold0053 (1 HSPs)
scaffold0053 (85-238)||(2259-2411)
[»] scaffold0223 (1 HSPs)
scaffold0223 (48-211)||(27078-27246)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-48)||(26309-26356)
[»] scaffold0096 (1 HSPs)
scaffold0096 (159-223)||(49501-49565)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30454436 - 30454201
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30454436 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 30454337  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30454336 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30454237  T
Q  201 gggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  30454236 gggtttggtgaaccaggataactctcctgtgttatt 30454201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30459494 - 30459259
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  30459494 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgccgaggttgataatacaggtgttacggactga 30459395  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459394 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30459295  T
Q  201 gggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  30459294 gggtttggtgaaccaggataactctcctgtgttatt 30459259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30445064 - 30444829
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  30445064 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttatggactga 30444965  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30444964 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30444865  T
Q  201 gggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||| |||||||||||||||||||||||    
T  30444864 gggtttggtgaatcaggataactctcctgtgttatt 30444829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24422230 - 24422467
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  24422230 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 24422329  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24422330 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24422429  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    || |||||||||||||||||||||||||||||||||||    
T  24422430 ggatttggtgaaccaggataactctcctgtgttattct 24422467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18568991 - 18569229
Alignment:
Q  1 cttaatagtttt-gagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactg 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  18568991 cttaatagtttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactg 18569090  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18569091 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagc 18569190  T
Q  200 cgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18569191 cgggtttggtgaaccaggataactctcctgtgttattct 18569229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24412781 - 24413018
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  24412781 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 24412880  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24412881 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24412980  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    || |||||||||||||||||||||||||||||||||||    
T  24412981 ggatttggtgaaccaggataactctcctgtgttattct 24413018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 22489138 - 22489375
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||    
T  22489138 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagtctgctgaggttgataatacaggtgtaacggactga 22489237  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22489238 tctggtgtgatcaagatcttatagtgctagtcataagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 22489337  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22489338 gggtttggtgaaccaggataactctcctgtgttattct 22489375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4635898 - 4636134
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||    
T  4635898 cttaatagttttgagatagaaaattccaacatttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataaaacaggtgtaacggactga 4635997  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    | ||||||||||||||  || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| || |||||    
T  4635998 tatggtgtgatcaagatcttatagtgctggtcagaagtttctgttagcaagacaactatagtggataatctcacgtgaggtgtggggactgaaaatagcc 4636097  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattc 237  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4636098 gggtttggtgaaccaggataactctcatgtgttattc 4636134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 42732761 - 42732575
Alignment:
Q  51 aagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa 150  Q
    ||||||| || ||||||| |||||||||||||||||| |||  |||||||||||||||||||||||  || |||||||||| ||||||||||  ||||      
T  42732761 aagaattgtagaagcctgttgaggttgataatacaggggttctggactgatctggtgtgatcaagaccttatagtgctagttagaagtttctactagct- 42732663  T
Q  151 gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42732662 gaatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattct 42732575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13815605 - 13815371
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactg 99  Q
    |||||||||||  |||||||||||||||||||||||||||||||||  ||||||||| ||  ||||||| |||||||||||||||| | ||||| || ||    
T  13815605 cttaatagttta-agatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgttgaggttgataatacaagggttacagaatg 13815509  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || ||||||||||   | |||  ||| ||||||||||||||||||||| || ||||||||||||||||||    
T  13815508 atctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaatactatagtggataatctcacatgaagtgtggggactggaagta 13815412  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  13815411 gccggatttggtgaaccaggataactctcctgtgttattct 13815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24244267 - 24244050
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  || ||||||||||||||||||||||  |||||  ||||||| |||||    
T  24244267 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 24244170  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24244169 gatcaagacgttgtagtgttgattagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 24244071  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  24244070 tgaaccaggataactctcctg 24244050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 24290891 - 24290674
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  || ||||||||||||||||||||||  |||||  ||||||| |||||    
T  24290891 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 24290794  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24290793 gatcaagacgttgtagtgttgattagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 24290695  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  24290694 tgaaccaggataactctcctg 24290674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 33955687 - 33955498
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  |||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  33955687 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgtactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 33955591  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33955590 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 33955498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 11223376 - 11223564
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  11223376 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 11223472  T
Q  148 caa-gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||  | | |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  11223473 cactgtatactataatggataatctcacacgaagtgtggggactggaagtagccgagtttggtgaaccaggataactcttttgtgttattct 11223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 20035999 - 20036188
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||||||||| |||||||||||| ||  |||| |||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  20035999 gcaaagaattgtagaagcctgctaaggttgataatatagtggttatggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 20036095  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20036096 caactgtatactatagtggataatctcacatgatgtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattct 20036188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 22118291 - 22118134
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    ||||| |||| || |||| |||||| |||||||||||||| ||| || ||||||||||||||||||||||  || ||||| || ||||||||||||||||    
T  22118291 gcaaataattgtagaagcatgctgatgttgataatacaggatgtaacagactgatctggtgtgatcaagaccttatagtgttattcagaagtttctgtta 22118192  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggt 204  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  22118191 gcaagacaactataatggataatctcacacgaggtgtggggactggaagtagtcgggt 22118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 5600591 - 5600749
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||| || | |||||    
T  5600591 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggata-ctata 5600689  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||| || ||||||||||||    
T  5600690 gtggataatctcacacgtggtgtggggactggacgtagcc-ggttaggcgaaccaggataa 5600749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 5610237 - 5610395
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||| || | |||||    
T  5610237 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggata-ctata 5610335  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    ||||||||||||||||| ||||||||||||||| |||||| |||| || ||||||||||||    
T  5610336 gtggataatctcacacgtggtgtggggactggacgtagcc-ggttaggcgaaccaggataa 5610395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 20834431 - 20834614
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    ||||||||||  | |||||||||||||||||| ||||||  |||||| ||||||||||| |||||||||  || ||||| | || ||||||||||   |     
T  20834431 gcaaagaattggagaagcctgctgaggttgattatacagtggttacgaactgatctggtatgatcaagaccttatagtgttggttagaagtttct---ac 20834527  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 232  Q
    |||  | | |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20834528 caactgcatactatagtggataatctcacacggagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 20834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 31150809 - 31150651
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||| || | ||||||    
T  31150809 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc-aggatactata 31150711  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  31150710 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 31150651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 26652642 - 26652808
Alignment:
Q  71 gaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatc 170  Q
    ||||||||||||||| | |||  | |||||| ||||||||||||||  |  |||||||||| |||||||||| |||||  ||| |||||||||||| |||    
T  26652642 gaggttgataatacaagggttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagct-gaatactatagtggattatc 26652740  T
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  26652741 tcacacgaagtgtggggactggaagtagtcaggtttggtgaaccagcataactctcctgtgttattct 26652808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 26924227 - 26924393
Alignment:
Q  71 gaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatc 170  Q
    ||||||||||||||| | |||  | |||||| ||||||||||||||  |  |||||||||| |||||||||| |||||  ||| |||||||||||| |||    
T  26924227 gaggttgataatacaagggttctgaactgatatggtgtgatcaagacctaatagtgctagttagaagtttctattagct-gaatactatagtggattatc 26924325  T
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  26924326 tcacacgaagtgtggggactggaagtagtcaggtttggtgaaccagcataactctcctgtgttattct 26924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 22448411 - 22448330
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  22448411 actatagtggataatctcacacgaagtgtggggactggaagtagccggattgggtgaaccaggataactctcttgtgttatt 22448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 37514940 - 37514857
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| |||| |||| |||||||||||    
T  37514940 actatagtggataatctcacacaaggtgtggggactagaagtagccggctttgatgaaccagtataaatctcatgtgttattct 37514857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 22457722 - 22457666
Alignment:
Q  180 gtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||    
T  22457722 gtgtggggactggaagtagccggattgggtgaacaaggataactcttctgtgttatt 22457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16111002 - 16111058
Alignment:
Q  166 taatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataa 221  Q
    ||||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||    
T  16111002 taatctcacacgaagtgtcgggactggaagtagccggcttttggtgaaccatgataa 16111058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 719018 - 718954
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  719018 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 718954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 727998 - 727934
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  727998 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 727934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 6331735 - 6331671
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  6331735 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 6331671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26812461 - 26812698
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26812461 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 26812560  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812561 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 26812660  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26812661 gggtttggtgaaccaggataactctcctgtgttattct 26812698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26821928 - 26822165
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26821928 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttacggactga 26822027  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26822028 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 26822127  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26822128 gggtttggtgaaccaggataactctcctgtgttattct 26822165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3242522 - 3242285
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  3242522 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 3242423  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242422 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3242323  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3242322 gggtttggtgaaccaggataactctcctgtgttattct 3242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54690148 - 54689911
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  54690148 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 54690049  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54690048 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 54689949  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54689948 gggtttggtgaaccaggataactctcctgtgttattct 54689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54699579 - 54699342
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  54699579 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 54699480  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54699479 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 54699380  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54699379 gggtttggtgaaccaggataactctcctgtgttattct 54699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37059039 - 37059276
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  37059039 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 37059138  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37059139 tctggtgtgatcaagatcttgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 37059238  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37059239 gggtttggtgaaccaggataactctcctgtgttattct 37059276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3918019 - 3918256
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  3918019 cttaatagttttgagaaagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 3918118  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3918119 tctggtgtgatcaagaaattgtaatgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3918218  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3918219 gggtttggtgaaccaggataactctcctgtgttattct 3918256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 15843133 - 15842897
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||    
T  15843133 cttaatagttttgagatagaaaatttcaacctttcttttgctagtgtgcaaagaattgtagaagcctgcttaggttgataatacaggtgtaacagactga 15843034  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15843033 tctgatgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 15842934  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattc 237  Q
    | ||||||||||||| |||||||||||||||||||||    
T  15842933 gagtttggtgaaccaagataactctcctgtgttattc 15842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 20884636 - 20884447
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||| |  || ||||| | || ||||||||||   |     
T  20884636 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaaaaccttatagtgttggttagaagtttct---ac 20884540  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20884539 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggggaaccaggataactctcctgtgttattct 20884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 50516685 - 50516496
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| ||  ||||||||||||||||||||||| | ||||||||||||||||||||||||||||  || ||||| | || |||| |||||   |     
T  50516685 gcaaagaattgtaacagcctgctgaggttgataatacaagggttacggactgatctggtgtgatcaagaccttatagtgttggttagaaatttct---ac 50516589  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  50516588 caacggaatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttggggaaccaggataactctcctgtgttattct 50516496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 11482315 - 11482504
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||  || ||||| | || ||||||||||   |     
T  11482315 gcaaagaattgtagaagccggctgaggttgataatacaggggttacggactgatatggtgtgataaagaccttatagtgttggttagaagtttct---ac 11482411  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||  ||||||||    
T  11482412 caactgtatactatagtggataatctcacacgaagtgtggggactagaagtagccgggtttggacaaccaggataactctcctacgttattct 11482504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 23622930 - 23623088
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||| || | |||||    
T  23622930 aagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggata-ctata 23623028  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  23623029 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 23623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 18125579 - 18125410
Alignment:
Q  66 ctgctgaggttgataataca-ggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtgg 164  Q
    |||||||||||||||||||| ||||| || || ||||||| |||||||||    ||  | |||| || |||||||| |||||||| || | ||||| |||    
T  18125579 ctgctgaggttgataatacaaggtgtaacagaatgatctgttgtgatcaat---tttcaatgctggtaagaagtttttgttagcaggata-ctataatgg 18125484  T
Q  165 ataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||| ||| | || || |||| |||  ||||||||||||| |||| ||||| |||||    
T  18125483 ataatctcacacgaggtgtggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgtcattct 18125410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 16490010 - 16489947
Alignment:
Q  66 ctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgct 128  Q
    ||||||||||||||||||| | |||| || ||||||| |||||||||||| ||||| |||||||    
T  16490010 ctgctgaggttgataatactgagtgtaacagactgatatggtgtgatcaacaaattatagtgct 16489947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 28256155 - 28256097
Alignment:
Q  180 gtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||| ||||||||   |||| ||||||| ||||| ||||||||||||||||    
T  28256155 gtgtggggactgaaagtagccaactttgatgaaccacgataaatctcctgtgttattct 28256097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 112634 - 112698
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  112634 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 112698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 14917028 - 14917092
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  14917028 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 14917092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 23895851 - 23895614
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23895851 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 23895752  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895751 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 23895652  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23895651 gggtttggtgaaccaggataactctcctgtgttattct 23895614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18420504 - 18420741
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  18420504 cttaatagtttggagatagaaaattccaacctttcttttgctattgtgcaaagaattgtataagcctgctgaggttgataatacaggtgtaacggactga 18420603  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  18420604 tctggtgtgatcaagatttgttagtgctagtcagaagtttctgttagcaagaaaactatagtgtataatctcacacgaggtgtcgggactggaagtagcc 18420703  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  18420704 gggttttgtgaaccaggataactatcctgtgttattct 18420741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 14102308 - 14102497
Alignment:
Q  50 aaagaattatataagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||| || ||| ||||||||||| |||||||||| ||| || | |||||||| |||||||||||  ||  ||||||||||| ||||||||||||||    
T  14102308 aaagaattgtagaagtctgctgaggttaataatacagggtgtaacaggctgatctgttgtgatcaagaccttacagtgctagtcaaaagtttctgttagc 14102407  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  14102408 aagacaactatagtggataatctcacaagaggtgtggggactggaagtagccgggtttggtgaaccaggataattcttcagtgttattct 14102497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 22066293 - 22066482
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||  || ||||| | || ||||||||||   |     
T  22066293 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctagtgtgatcaagaccttatagtgttggttagaagtttct---ac 22066389  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22066390 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 22066482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 23884492 - 23884677
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  23884492 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 23884588  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 234  Q
    |||  | | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23884589 caactgcatactatagtggacaatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 23884677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 10259945 - 10259779
Alignment:
Q  70 tgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataa 168  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| || | |||||||||| ||    
T  10259945 tgaggtttataatacagggtgtaacggactgatctggtgtgatcaagaatttatagtgctagtcagaagtttctcttagcaggata-ctatagtggagaa 10259847  T
Q  169 tctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    || ||||||| ||||| |||||||||||||| || ||||||||||||| |||| ||||||||||||||    
T  10259846 tcccacacgaagtgtgaggactggaagtagctggatttggtgaaccagaataattctcctgtgttatt 10259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 17512408 - 17512221
Alignment:
Q  49 caaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||| || ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||  || ||||| | || ||||||||||   | |    
T  17512408 caaagaattgtagaagcctgctaaggttgataatacagg-gttacagactgatctagtgtgatcaagactttatagtgttggttagaagtttct---acc 17512313  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||  | | ||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  17512312 aactgtatactatagtggataatctcacaagaagtgtggggactgaaagtagccgagtttggtgaaccaggataactcttctgtgttattct 17512221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 11421611 - 11421451
Alignment:
Q  76 tgataataca-ggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcac 174  Q
    |||||||||| ||||| || ||||||||||||||||||||||  || ||||| ||||||||| ||| ||||| || || | |||||||||||||||||||    
T  11421611 tgataatacatggtgtaacagactgatctggtgtgatcaagatcttatagtgttagtcagaattttttgttaacatgata-ctatagtggataatctcac 11421513  T
Q  175 acgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||| | || |||||||||    
T  11421512 acgaggtgtggggactggaagtagccggatttgatgaactaggataattatcttgtgttatt 11421451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 12173469 - 12173610
Alignment:
Q  96 actgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaag 195  Q
    |||||||||||||||||||||| || | |||||||||| ||||||||||||||| || | |||||||||||||||| |||| |||||||||||||| |||    
T  12173469 actgatctggtgtgatcaagaatttatggtgctagtcataagtttctgttagcatgata-ctatagtggataatcttacacaaggtgtggggactgaaag 12173567  T
Q  196 tagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||| ||||||||||| | ||||| ||||  ||||||||||    
T  12173568 tagccgagtttggtgaactatgataaatctcaggtgttattct 12173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 23110405 - 23110242
Alignment:
Q  50 aaagaattatataagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||| || ||||||| ||| ||||||||||  || ||| |  |||| ||||||||||||||||||  | |||||||||||||||||||||||||||    
T  23110405 aaagaattttagaagcctgttgatgttgataatattgggtgtaatagacttatctggtgtgatcaagaacatatagtgctagtcagaagtttctgttagc 23110306  T
Q  149 aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaac 213  Q
      ||| ||||||||||||||||| ||||| ||||||||||||||||||||| || ||| ||||||    
T  23110305 c-gaatactatagtggataatctaacacggggtgtggggactggaagtagctggttttcgtgaac 23110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 12415075 - 12415190
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    |||||||||  |||| ||||||||| |||| |||||||||||||||||||||||   ||| |||||||| | ||||||||||| ||   || | ||||||    
T  12415075 aagcctgctatggttaataatacagagtgtaacggactgatctggtgtgatcaacttattatagtgctattaagaagtttctgata-agaggatactata 12415173  T
Q  161 gtggataatctcacacg 177  Q
     ||||||||||||||||    
T  12415174 atggataatctcacacg 12415190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 13218363 - 13218453
Alignment:
Q  59 tataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    ||||||| || |||||||||||||| ||   || || |||| |||||||||||||| |  || |||| ||||||| |||||||||||||||    
T  13218363 tataagcttgttgaggttgataatatagtgattccgaactggtctggtgtgatcaataccttatagttctagtcaaaagtttctgttagca 13218453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 24794781 - 24794544
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  24794781 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 24794682  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24794681 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 24794582  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24794581 gggtttggtgaaccaggataactctcctgtgttattct 24794544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28367888 - 28367651
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  28367888 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28367789  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28367788 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28367689  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28367688 gggtttggtgaaccaggataactctcctgtgttattct 28367651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28375706 - 28375469
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  28375706 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28375607  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375606 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28375507  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28375506 gggtttggtgaaccaggataactctcctgtgttattct 28375469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28383528 - 28383291
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  28383528 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 28383429  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383428 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28383329  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28383328 gggtttggtgaaccaggataactctcctgtgttattct 28383291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28351955 - 28351718
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||    
T  28351955 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctaaggttgataatacagaggttacggactga 28351856  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28351855 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 28351756  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28351755 gggtttggtgaaccagcataactctcctgtgttattct 28351718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38529412 - 38529176
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| || |||| |    
T  38529412 cttaatcgttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagcctactgaggttgataatacaagtgtaacagactca 38529313  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  38529312 tctggtgtgatcaagatcttatagtgctagtcagaaatttctgttagcaagacaactatagtggataatctcacacgaggtgtgggcactggaagtagcc 38529213  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattc 237  Q
    ||||||||||||| | |||||||||||||| ||||||    
T  38529212 gggtttggtgaactatgataactctcctgtattattc 38529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4951547 - 4951783
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| || ||| ||| ||||||||||||||||||||| || ||||||    
T  4951547 cttaatagttt-gagatagaaaatttcaacctttcttttgctagtgtgtaaagaattgtagaaggctgttgaggttgataatacaggtgtaacagactga 4951645  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||| ||| |  |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||| |    
T  4951646 tctggtgtgaccaataccttgtagtgctagtcagaaatttctgttagcaagacaaatatagtggataatctcacacgaggtgtgaggacttgaagtagtc 4951745  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    | ||||||||||||| |||||||||| |||||||||||    
T  4951746 gagtttggtgaaccaagataactctcatgtgttattct 4951783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 5385690 - 5385874
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||| ||||||  |||||  |||||||||||||||||||||  || ||||| | || |||||||||| | ||    
T  5385690 gcaaagaattgtagaagcctgctgaggttgatgatacagtggttacatactgatctggtgtgatcaagaccttatagtgttggttagaagtttctatcag 5385789  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    |  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5385790 ct-gtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 5385874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 13328465 - 13328278
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||  |  ||||| | || ||||||||||   |     
T  13328465 gcaaagaattgtagaagcttgctgaggttgataatacaagggttacggactgatctggtgtgatcaagacctaatagtgttggttagaagtttct---ac 13328369  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  13328368 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttggtgaaccaagataactctcctgtgttatt 13328278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 23487041 - 23487232
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  23487041 gcaaagaattgtagaagcctgctgaggttgataatacaagggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 23487137  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactg--gaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  23487138 caactgaatactatagtggataatctcacacgaaatgtggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattct 23487232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 46305760 - 46305572
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  46305760 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 46305664  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  46305663 caactgtatactaaagtggataatctca-acgaagtgtggggactggaagtagccgggtttgatgaaccaagataactctcctgtgttattct 46305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 17530035 - 17529877
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||| || | ||||||    
T  17530035 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc-aggatactata 17529937  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  17529936 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 17529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 32877881 - 32878039
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||| ||||| || |||||||||| || ||||| || | |||||    
T  32877881 aagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacaaattatagtgttattcagaagtttatgatagcatgata-ctata 32877979  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  32877980 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 32878039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 54624666 - 54624824
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| ||||||| | ||| |||||||| ||||||||||||| ||||| || | |||||    
T  54624666 aagcctgctgaggttgataatacagagtgtaacagactgatctggtatgatcaacatattatagtgctattcagaagtttctgatagcaggata-ctata 54624764  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  54624765 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 54624824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 48978681 - 48978835
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     | | | ||||||    
T  48978681 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----atggatactata 48978775  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  48978776 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 48978835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 48988221 - 48988375
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     | | | ||||||    
T  48988221 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----atggatactata 48988315  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  48988316 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 48988375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 7784194 - 7783987
Alignment:
Q  50 aaagaattatataagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||||||| || |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||  || ||||| |||||| ||||||||||||||    
T  7784194 aaagaattgtagaagcctgctgaggttgataatacagggtgtaacagactgatctggtgtgatcaagaccttatagtgttagtcataagtttctgttagc 7784095  T
Q  149 ------------------aagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgt 230  Q
                      |||| |||| ||||||||||||||||| | |||||||| ||||||||||| | ||||||||||||||| | |  ||||||||    
T  7784094 aagacagtttctgttagcaagacaactgtagtggataatctcacatgtggtgtgggaactggaagtagtcaggtttggtgaaccagaacagttctcctgt 7783995  T
Q  231 gttattct 238  Q
    ||||||||    
T  7783994 gttattct 7783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 19388809 - 19388936
Alignment:
Q  95 gactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta--gcaagaaaactatagtggataatctcacacgaggtgtggggactgg 192  Q
    ||||||| |||||| ||||| || || |||||||| |||||||||| || ||  ||  ||| |||||||| ||||||||||||||| ||||||||||| |    
T  19388809 gactgatatggtgtcatcaacaacttatagtgctattcagaagtttatgatatagct-gaatactatagtcgataatctcacacgaagtgtggggacttg 19388907  T
Q  193 aagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||  ||||||||||||||||||    
T  19388908 aagtagccgattttggtgaaccaggataa 19388936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 4361683 - 4361514
Alignment:
Q  66 ctgctgaggttgataataca-ggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtgg 164  Q
    |||||||||||||||||||| ||||| || || ||||||| |||||||||    ||  | |||| || |||||||| |||||||| || | ||||| |||    
T  4361683 ctgctgaggttgataatacaaggtgtaacagaatgatctgttgtgatcaat---tttcaatgctggtaagaagtttttgttagcaggata-ctataatgg 4361588  T
Q  165 ataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||| ||| | || || |||| |||  ||||||||||||| |||| ||||| |||||    
T  4361587 ataatctcacacgaggtgtggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgtcattct 4361514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 24285493 - 24285537
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagc 199  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||    
T  24285493 actatagtggataatctcacacgaagtgtagggagtggaagtagc 24285537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 94666 - 94429
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  94666 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 94567  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  94566 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 94467  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||| |||||||||||||||||||||||||||||||    
T  94466 gggtttagtgaaccaggataactctcctgtgttattct 94429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 104107 - 103870
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  104107 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacggactga 104008  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  104007 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaattagcc 103908  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  103907 gggtttggtgaaccaggataactctcctgtgttattct 103870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 82272 - 82336
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  82272 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 82336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31058 - 30821
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  31058 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacaggtgttactgactga 30959  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30958 tctggtgtgatcaaaatattgtagtgttagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 30859  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30858 gggtttggtgaaccaggataactctcctgtgttattct 30821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9998 - 10230
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||| |||||||||||||| ||| ||| |||| ||||||  ||||||||| || ||||||  ||||||||||||||||||||| || ||||||    
T  9998 cttaatagttt-gagatagaaaattctaacatttatttttctagtg--caaagaattgtagaagcctattgaggttgataatacaggtgtaacagactga 10094  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||| |||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  10095 tctggtgtgatctagaccttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacggggtgtggggactggaa-tagcc 10193  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattc 237  Q
    | ||||||||||||| |||||||||| ||||||||||    
T  10194 gtgtttggtgaaccaagataactctcatgtgttattc 10230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15174493 - 15174730
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15174493 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgtaacggactga 15174592  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15174593 tctggtgtgatcaagatcttgtagtgctagtcagaagtttttgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 15174692  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15174693 gggtttggtgaaccaggataaatctcctgtgttattct 15174730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7592959 - 7593196
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  7592959 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgatgaggttgataatacaggtgttacggactga 7593058  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7593059 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactataatggataatctcacacgaggtgtggggactggaagtagcc 7593158  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
     ||||||||||||||||||||||||| |||||||||||    
T  7593159 aggtttggtgaaccaggataactctcttgtgttattct 7593196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 14634965 - 14634776
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   ||    
T  14634965 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctaccag 14634866  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14634865 ct-gcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14634776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 11634554 - 11634337
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||||||||||||||||||||||  |||||  ||||||| |||||    
T  11634554 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacaaactgatcgggtgt 11634457  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  || ||||| | || |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  11634456 gatcaagacgttatagtgttggttagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 11634358  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  11634357 tgaaccaggataactctcctg 11634337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 14644665 - 14644476
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14644665 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 14644569  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644568 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 33292364 - 33292175
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  33292364 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 33292268  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33292267 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 33292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 15947560 - 15947371
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  15947560 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 15947464  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15947463 caactgcatactatagtggataatctcacacgaagtgtggtgactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 15947371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 32817997 - 32818185
Alignment:
Q  49 caaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    |||| |||| || |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||  || ||||| | || ||||||||||   | |    
T  32817997 caaaaaattgtagaagcctgcggaggttgataatacaggggttacagactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---acc 32818093  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||  ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32818094 aactgaatactatagtggataatctcacacgaagtgtggggaccggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 32818185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 9736946 - 9737135
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||| | ||| |||||||||||||||||||||   || ||||| | || ||||||||||   |     
T  9736946 gcaaagaattgtagaagcctgctgaggttgataatacaggggctacagactgatctggtgtgatcaaggccttatagtgttggttagaagtttctacaaa 9737045  T
Q  148 caagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |  ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9737046 ct-gaatactataatggataatctcacacgaagtgtggggactggaagtagccgggtttagtgaaccaggataactctcctgtgttattct 9737135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 19352763 - 19352589
Alignment:
Q  62 aagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||| ||||||| |||||||||| ||| |||||  ||||||||||||||| ||| || |||| | ||||||||||||||||||||| || | |||||    
T  19352763 aagcctgatgaggttcataatacagggtgtaacggaaagatctggtgtgatcaggaatttatagtacaagtcagaagtttctgttagcaggaga-ctata 19352665  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||| ||||| ||||||||||||||||  ||||||||||||| ||||||||||||| |||||    
T  19352664 gtggataatctcacacgaagtgtgaggactggaagtagccgaatttggtgaaccagtataactctcctgtattatt 19352589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 236
Target Start/End: Original strand, 13874423 - 13874572
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 182  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  |||||||||||||||||||||||||||| |||    
T  13874423 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaaaactatagtggataatctcacacgaagtg 13874519  T
Q  183 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  13874520 tggggactggaagtag-cggattgggtgaaccaggataactctcctgtgttatt 13874572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 48710121 - 48710005
Alignment:
Q  122 tagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggg-actggaagtagccgggtttggtgaaccaggata 220  Q
    |||||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||| |||    
T  48710121 tagtgctagttagaagtttctactagct-gaatactatagtggataatctcacacgaagtgtgggggactggaagtatccgagtttggtgaaccagaata 48710023  T
Q  221 actctcctgtgttattct 238  Q
     |||||||||||||||||    
T  48710022 tctctcctgtgttattct 48710005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 4306727 - 4306573
Alignment:
Q  66 ctgctgaggttgataatacag-gtgtta-cggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtg 163  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||||| ||  |  ||||||| ||| ||||||||| |||   || | |||||||     
T  4306727 ctgctgaggttgataatacagagtgtaatcggactgatctggtgtgatcaacaacat--agtgctattcataagtttctgatagttggata-ctatagta 4306631  T
Q  164 gataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || |||||||| ||| ||||||| |||||||||||| || |||||||||| |||||||    
T  4306630 gaaaatctcactcgaagtgtgggaactggaagtagctggctttggtgaactaggataa 4306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 48711469 - 48711401
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaaga 116  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||| || |||||| ||||||||||||||    
T  48711469 gcaaagaattatagaagcctgttgaggttgataatacatgtgttccgaactgatatggtgtgatcaaga 48711401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 607218 - 607282
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  607218 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 616313 - 616377
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  616313 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 616377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 408281 - 408518
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| |    
T  408281 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgaagaggttgataatacaggtgttacggactaa 408380  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  408381 tctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagac 408480  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  408481 gggtttggtgaaccaggataactctcctgtgttattct 408518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3486 - 3723
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  3486 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 3585  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3586 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 3685  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  3686 gggtttggtgaaccagaataattctcctgtgttattct 3723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7789313 - 7789076
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  7789313 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtataagcctgctgaggttgataatacagaggttacagactga 7789214  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7789213 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 7789114  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  7789113 gggtttggtgaaccagaataattctcctgtgttattct 7789076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20714022 - 20714259
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||    
T  20714022 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataatacaggtgtaacagactga 20714121  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  20714122 tctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactataatggataatgtcacacgaggtgtggggactggaagtagcc 20714221  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20714222 gggtttggtgaaccaggataactctcatgtgttattct 20714259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18143661 - 18143427
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||| ||||||||||||||||| | ||||| |||||    
T  18143661 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctactgaggttgataatacaagggttacagactg 18143565  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || ||||||||   ||| |||  |||  ||||||||||||||||||||||| ||||||||||||||||||    
T  18143564 atctggtgtgatcaagaccttatagtgttggttagaagttt---ttaccaactgaatgctatagtggataatctcacacgaagtgtggggactggaagta 18143468  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  18143467 gccggatttggtgaaccaagataactctcctgtgttattct 18143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 18883384 - 18883163
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||||||||||||||||||||||  | |||| |||||||||||||    
T  18883384 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagagggtacgaactgatctggtgt 18883287  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggttt 206  Q
    ||||||||  || ||||| | || |||| |||||   | |||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  18883286 gatcaagactttatagtgttggttagaattttct---accaactgaatactatagtggataatctcacacgaagtgtggggactggaagtagccggattt 18883190  T
Q  207 ggtgaaccaggataactctcctgtgtt 233  Q
    |||||||||||||||||||||||||||    
T  18883189 ggtgaaccaggataactctcctgtgtt 18883163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25051295 - 25051063
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||||||||||||||||||||||  ||||| |||||    
T  25051295 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacagactg 25051199  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    ||||||||||||||||| ||| ||||| | || |||||||||   || |||  ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25051198 atctggtgtgatcaagacattatagtgttggttagaagtttc---taccaactgaatactatagtggataatctcacacgaagtgtggggactggaagta 25051102  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| | || ||||||||| |||||||||| |||||||||    
T  25051101 gccagattgggtgaaccaagataactctcttgtgttatt 25051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 42712365 - 42712176
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  42712365 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 42712269  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42712268 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 42712176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25037258 - 25037026
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||  |||||||||||||||||||||||||  ||||| |||||    
T  25037258 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgctgaggttgataatacagaggttacagactg 25037162  T
Q  100 atctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagta 197  Q
    |||||||||||||||||  || ||||| | || |||||||||   || |||  ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25037161 atctggtgtgatcaagactttatagtgttggttagaagtttc---taccaactgaatactatagtggataatctcacacgaagtgtggggactggaagta 25037065  T
Q  198 gccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| | || ||||||||| |||||||||| |||||||||    
T  25037064 gccagattgggtgaaccaagataactctcttgtgttatt 25037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18232890 - 18233107
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  || ||||||||||||||||||||||  |||||  ||||||| |||||    
T  18232890 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18232987  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18232988 gatcaagacgttgtagtgttgattagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18233086  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  18233087 tgaaccaggataactctcctg 18233107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18242341 - 18242558
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  || ||||||||||||||||||||||  |||||  ||||||| |||||    
T  18242341 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18242438  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  |||||||| |  | |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18242439 gatcaagacgttgtagtgttgattagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18242537  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||||||||||||||||||||    
T  18242538 tgaaccaggataactctcctg 18242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18251792 - 18252009
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  || ||||||||||||||||||||||  |||||  ||||||| |||||    
T  18251792 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaatcctgctgaggttgataatacagaggttacaaactgatcgggtgt 18251889  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttgg 208  Q
    ||||||||  || ||||| | || |||||||||||  | |  ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18251890 gatcaagacgttatagtgttggttagaagtttctgccaact-gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttgg 18251988  T
Q  209 tgaaccaggataactctcctg 229  Q
    |||| ||||||||||||||||    
T  18251989 tgaatcaggataactctcctg 18252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 31575595 - 31575411
Alignment:
Q  51 aagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa 150  Q
    ||||||| || |||| ||||||||||||||||||||| |||  |||||||| ||||||||||||||  || |||||||||| ||||||||||  ||||      
T  31575595 aagaattgtagaagcttgctgaggttgataatacaggggttctggactgatttggtgtgatcaagaccttatagtgctagttagaagtttctactagct- 31575497  T
Q  151 gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  31575496 gaatactatagtggataatctcacacgaagtgtggggactggaagtagccggatttggtgaaccaggataactctcttgtgttatt 31575411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 20030179 - 20030368
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||||| | || |||||||| |   |     
T  20030179 gcaaagaattgtagaagcctgctgaggttgataatacagggattacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttat---ac 20030275  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20030276 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattct 20030368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 20044818 - 20045007
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  20044818 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 20044914  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  20044915 caactgtatactatcgtggataatctcacacgaagtgtggggactggatgtagccgggtttggtgaaccaggataactctcatgtgttattct 20045007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 12925355 - 12925543
Alignment:
Q  49 caaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagc 148  Q
    ||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   | |    
T  12925355 caaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---acc 12925451  T
Q  149 aa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||  | | |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  12925452 aactgcatactatagtggataatctcacacgaagtgtggggactggaagtagtcgggtttcgtgaaccaggataactctcctgtgttattct 12925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4843956 - 4843720
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataata--caggtgttacggac 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||  ||||||| ||||||||||||||  || | ||||| |||    
T  4843956 cttaatagttt-gagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcctgatgaggttgataatatacaagggttacagac 4843860  T
Q  98 tgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaag 195  Q
    |||||||||||||||||||  || ||||  | || |||| |||||   | |||  ||| |||||||||||||||||||||||| ||||||||||||||||    
T  4843859 tgatctggtgtgatcaagaccttatagtcttggttagaaatttct---accaactgaatactatagtggataatctcacacgaagtgtggggactggaag 4843763  T
Q  196 tagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||    
T  4843762 tagccggatttagtgaaccaggataactctcctttgttattct 4843720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 12767631 - 12767822
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || ||||| | || |||||||||   ||     
T  12767631 gcaaagaattgtagaagcctgctgaggttgataatacaggggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttc---tac 12767727  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggac--tggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  ||| ||||||||||||||||||||||||  |||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  12767728 caactgaatactatagtggataatctcacacgaaatgtggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattct 12767822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 33592284 - 33592134
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtg 184  Q
    |||||||  |||||||||| ||||||||||||  || ||||| | ||||||||||||||| | |  |||||||||||||||||||||||||||| |||||    
T  33592284 aggtgttctggactgatctagtgtgatcaagaccttatagtgttggtcagaagtttctgtcaact-gaaaactatagtggataatctcacacgaagtgtg 33592186  T
Q  185 gggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  33592185 gggactggaagtagccggattgggtgaaccaggataactctcctgtgttatt 33592134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 33601923 - 33601773
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtg 184  Q
    |||||||  |||||||||| ||||||||||||  || ||||| | ||||||||||||||| | |  |||||||||||||||||||||||||||| |||||    
T  33601923 aggtgttctggactgatctagtgtgatcaagaccttatagtgttggtcagaagtttctgtcaact-gaaaactatagtggataatctcacacgaagtgtg 33601825  T
Q  185 gggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  33601824 gggactggaagtagccggattgggtgaaccaggataactctcctgtgttatt 33601773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 12915500 - 12915648
Alignment:
Q  89 gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggg 186  Q
    ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | |||||||||||||||||||||||| |||||||    
T  12915500 gttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgcatactatagtggataatctcacacgaagtgtggg 12915596  T
Q  187 gactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12915597 gactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 12915648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 24096217 - 24096077
Alignment:
Q  94 ggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactgg 192  Q
    |||||||| |||||| |||||||| ||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  24096217 ggactgatatggtgtaatcaagaacttgtagtgctagtcaaaagtttatgttagcaag-atactatagtggataatctcacacgaggtgtgggggactgg 24096119  T
Q  193 aagtagccgggtttggtgaaccaggataactctcctgtgtta 234  Q
    |||||| || |||||||||||||| |||| ||||||||||||    
T  24096118 aagtagtcgagtttggtgaaccagaataaatctcctgtgtta 24096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 15833950 - 15834137
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggt-gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    |||||||||| || || ||| |||| ||||||||||||||  || ||| ||| ||||||| || ||||||| || |||||||||||||||||||| ||||    
T  15833950 gcaaagaattgtagaaacctactgatgttgataatacagggagtaacgaacttatctggtatggtcaagaacttatagtgctagtcagaagtttcagtta 15834049  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttat 235  Q
    ||| || | ||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| |||| ||||||||    
T  15834050 gcatgata-ctataatggataatctcacacgaggtgtgtggactgaaagtagccggatttggtgaaccaagataaatctcttgtgttat 15834137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 24634009 - 24634145
Alignment:
Q  89 gttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggga 188  Q
    |||| |||||||||||||||||||||||  || |||||||||| ||||||||||  ||||  ||| ||||||||||||||| |||||||| |||||||||    
T  24634009 gttatggactgatctggtgtgatcaagaccttatagtgctagttagaagtttctactagct-gaatactatagtggataatatcacacgaagtgtgggga 24634107  T
Q  189 ctggaagtagccgggtttggtgaaccaggataactctc 226  Q
    |||||||||| ||||||||  |||||||||||||||||    
T  24634108 ctggaagtagtcgggtttgaggaaccaggataactctc 24634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 20714417 - 20714484
Alignment:
Q  171 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20714417 tcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcatgtgttattct 20714484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 42896299 - 42896174
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtg 184  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || |||||||||| | | |  |||| ||||||||||||||||||||||| |||||    
T  42896299 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttctatcaact-gaaatctatagtggataatctcacacgaagtgtg 42896201  T
Q  185 gggactggaagtagccgggtttggtga 211  Q
    | |||||||||||||||| || |||||    
T  42896200 gagactggaagtagccggattgggtga 42896174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 26194106 - 26194048
Alignment:
Q  175 acgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    |||| ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  26194106 acgaagtgtggggactagaagtagttgggtttgatgaaccaggataactctcatgtgtt 26194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31710701 - 31710464
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||    
T  31710701 cttactagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattgtagaagtctgctgaggttgataatacaggtgtaacggactga 31710602  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31710601 tctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagcc 31710502  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  31710501 gggtttggtgaacaaggataactctcatgtgttattct 31710464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 24022976 - 24022740
Alignment:
Q  2 ttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgat 101  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||    
T  24022976 ttaatagttttgagatagaaaatttcaaccttccttttgctagtgtgcaaagaattgtagaagcctgttgaggttgataatacaggtgtaacggactgat 24022877  T
Q  102 ctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccg 201  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  24022876 ctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtgggaattggaagtagccg 24022777  T
Q  202 ggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||||||| |||||||||||||  |||||||||    
T  24022776 ggtttggtgaacgaggataactctccaatgttattct 24022740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14273158 - 14273394
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| || ||||||    
T  14273158 cttaatagttta-agatagaaaattccaacatttcttttgctagtgtgcaaagaattgtagaagcctgctgaggttgataatataggtgtaacagactga 14273256  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagcc 200  Q
    | ||||||||| ||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14273257 tatggtgtgattaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggagactgaaagtagcc 14273356  T
Q  201 gggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  14273357 gggtttggtgaaccaggataattctcgtgtgttattct 14273394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 35877516 - 35877705
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  |||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  35877516 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 35877612  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35877613 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattct 35877705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 35885005 - 35885194
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  |||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  35885005 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 35885101  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35885102 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattct 35885194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 36724718 - 36724907
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  |||||| |||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  36724718 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacgaactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 36724814  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36724815 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattct 36724907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 3396923 - 3397108
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||| ||||||||||||||||||||   ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  3396923 gcaaagaattttagaagtctgctgaggttgataatacaatggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 3397019  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 234  Q
    |||  | | |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  3397020 caactgtatactatagtggataatctcacacgaagtgtggggactagaagtagctgggtttggtgaaccatgataactctcctgtgtta 3397108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 1800504 - 1800662
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||| || | ||||||    
T  1800504 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc-aggatactata 1800602  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  1800603 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 1800662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 22632413 - 22632571
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| ||||| |||||||||||||||| |||| || | ||||||    
T  22632413 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgttagtcagaagtttctgatagc-aggatactata 22632511  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  22632512 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 22632571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 1791010 - 1791164
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| |||||||||||||     | | | ||||||    
T  1791010 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctg-----atggatactata 1791104  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  1791105 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 1791164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 18578707 - 18578875
Alignment:
Q  70 tgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataa 168  Q
    |||||||||||||||||| ||| || || || |||||||| |||||||| || |||| ||||||| ||||||||||||| | || |  ||  ||| ||||    
T  18578707 tgaggttgataatacagggtgtaacagattggtctggtgttatcaagaacttatagtcctagtcaaaagtttctgttaggaggatat-tactgtgaataa 18578805  T
Q  169 tctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||| |||||||||||||| |||||| |||||||| |||||  |||||| |||| |||||||||||    
T  18578806 tctcacacaaggtgtggggactgaaagtagtcgggtttgatgaacatggataaatctcatgtgttattct 18578875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 16446670 - 16446739
Alignment:
Q  155 actatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactc 224  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| ||| ||| |||| ||||||||||||    
T  16446670 actatagtggataatctcacacgaaatgtggggactgaaagtagtcggatttagtgatccaggataactc 16446739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 29911278 - 29911350
Alignment:
Q  166 taatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||||| |||||||||||| ||| || |||||| ||||| ||||| |||| |||||||||||    
T  29911278 taatctcacacgaggtgaggggactggaagcagctggatttggttaaccatgataaatctcatgtgttattct 29911350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 5378613 - 5378422
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacagg-tgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    |||||||||| || ||| ||||||||||| |||||| ||| ||| || ||||||||||||||||||||||  || |||||||||| ||||||||||||||    
T  5378613 gcaaagaattgtagaagtctgctgaggtttataatatagggtgtaacagactgatctggtgtgatcaagaccttatagtgctagttagaagtttctgtta 5378514  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5378513 gcaagacaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataattctcctgtgttattct 5378422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15810216 - 15809976
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatataagcctgctgaggttgataatacaggtgttacggactga 100  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||   ||||||||| || |||| ||| || ||||||||||||||||| |||||||||    
T  15810216 cttaatagttt-gagatagaaaattccaacctttcttttgctggtt--caaagaattgtagaagcatgccgaagttgataatacaggtgtaacggactga 15810120  T
Q  101 tctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggga--------ctgg 192  Q
    ||||||||||||||||  || |||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||        ||||    
T  15810119 tctggtgtgatcaagaccttatagtgctactcagaagtttctgttaccaagataattatagtggataatctcacacgaggtgtggggactcgaactctgg 15810020  T
Q  193 aagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||| ||| |||||||||||||||||| |||| |||||||||    
T  15810019 aagtagtcggatttggtgaaccaggataattctcttgtgttatt 15809976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 14272205 - 14272016
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14272205 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttct---ac 14272109  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14272108 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14272016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 40999224 - 40999034
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataataca-ggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    |||||||||| || ||| ||| |||||||||||||||| ||||| ||  ||||||||||||||||||| |  || |||||||||||| ||||||| ||||    
T  40999224 gcaaagaattgtagaagtctgttgaggttgataatacatggtgtaacaaactgatctggtgtgatcaaaaccttatagtgctagtcataagtttccgtta 40999125  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattc 237  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  ||||||||||    
T  40999124 gcaagacaactatagtggataatctcacacgaggtgtggggactggaagttgtcgggtttggtgaaccaggataactcttatgtgttattc 40999034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 14282071 - 14281888
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  14282071 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgtttgttagaagtttct---ac 14281975  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 232  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14281974 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 14281888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 26906431 - 26906244
Alignment:
Q  51 aagaattatataagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    ||||||| || ||| ||||||||||||||||||||| |||| || |||||||||||||||| |||||| || ||||||||||||||||||||||||| ||    
T  26906431 aagaattgtaaaagtctgctgaggttgataatacagagtgtaacagactgatctggtgtgaccaagaacttatagtgctagtcagaagtttctgttaaca 26906332  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||| |  |||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||    
T  26906331 agatat-tataatggataatctcacacgaggtatggggactagaagtagcctggtttggtgaaccaggataaatctcgtgtgttattct 26906244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 21633594 - 21633769
Alignment:
Q  62 aagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatag 161  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| |||||  || || ||||||||||||||||||  |||  |||| |||||||    
T  21633594 aagcctgctgaggttgataatacagttgttccggactgatctggtgtgaccaagaccttataatgctagtcagaagtttctactag-tagaatactatag 21633692  T
Q  162 tggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    ||||||||||||||  | ||||||||||| || |||||||||||||||||||||| |||  | || |||||||||||    
T  21633693 tggataatctcacaaaaagtgtggggactagacgtagccgggtttggtgaaccagaatatttatcttgtgttattct 21633769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 3471124 - 3470949
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || || || | || |||||||||   ||     
T  3471124 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttataatgttggttagaagtttc---tac 3471028  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactc 224  Q
    |||  | | |||| |||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  3471027 caattgtatactacagtggataatctcacatgaagtgtgggggctggaagtaaccgggtttggtgaaccaggataactc 3470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 21919581 - 21919431
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 182  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  |||||||||||||||||||||||||||| |||    
T  21919581 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgaaaactatagtggataatctcacacgaagtg 21919485  T
Q  183 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  21919484 tggggactggaagtagccggattgggtgaatcaggataactctcctgtgttatt 21919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 30676788 - 30676976
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtta 146  Q
    |||||||||||||||||  || |||| |||||||||||| |||| || ||||||||| |||||||||||||  | |||||||| ||| ||||||||  ||    
T  30676788 gcaaagaattatataagtatgttgagattgataatacagagtgtaacagactgatcttgtgtgatcaagaacatatagtgctattcataagtttcttata 30676887  T
Q  147 gcaagaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttg-gtgaaccaggataactctcctgtgttat 235  Q
    ||  ||| | | || ||||||||||||||||| |||||||||||| |||||| | | |||| |||||||| ||||| |||  ||||||||    
T  30676888 gc-tgaatattgtaatggataatctcacacgaagtgtggggactgaaagtagtctgctttgtgtgaaccatgataaatcttgtgtgttat 30676976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 28310155 - 28310018
Alignment:
Q  92 acggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtggggactg 191  Q
    ||||||||||||||||||||||| || || ||||| || || ||||||| || |||| || | ||||||||||||||   ||||||  ||||||  || |    
T  28310155 acggactgatctggtgtgatcaacaacttatagtgttattcggaagtttttgatagc-aggatactatagtggataa--ccacacgtagtgtggaaaccg 28310059  T
Q  192 gaagtagccgggtttggtgaaccaggataactctcctgtgtt 233  Q
    ||||||||| |||| |||||| |||||||| |||| ||||||    
T  28310058 gaagtagcc-ggttaggtgaatcaggataaatctcttgtgtt 28310018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 256921 - 257142
Alignment:
Q  10 tttgagatagaaaattccaacctttcttttgctagtgtgcaaagaattatat-aagcctgctgaggttgataatacaggtgttacggactgatctggtgt 108  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||  |||| ||||||||||||||||||||  |||||| |||||||||||||    
T  256921 tttgagatagaaaattccaacctttcttttgctagtg--caaagaattgtaagaagcttgctgaggttgataatacagaggttacgaactgatctggtgt 257018  T
Q  109 gatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggttt 206  Q
    ||||||||  || ||||| | || |||||||||   || |||  ||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||    
T  257019 gatcaagactttatagtgttggttagaagtttc---taccaactgaatactatagtggataatttcacacgaagtgtggggactggaagtagccggattt 257115  T
Q  207 ggtgaaccaggataactctcctgtgtt 233  Q
    |||||||||||||||||||||||||||    
T  257116 ggtgaaccaggataactctcctgtgtt 257142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 2109 - 2298
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||||| | || |||||||| |   |     
T  2109 gcaaagaattgtagaagcctgctgaggttgataatacagggattacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttat---ac 2205  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2206 caactgtatactatagtggataatctcacacgaagtgtggggactggaagtagccgggtttggtgaaccaggataactctcttgtgttattct 2298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 124047 - 124236
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttag 147  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  || ||||| | || ||||||||||   |     
T  124047 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---ac 124143  T
Q  148 caa--gaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||  | | |||||||||||||||||||||||| |||||||||||||||||| | || |||| ||||||||||||||||||||||||||||||    
T  124144 caactgcatactatagtggataatctcacacgaagtgtggggactggaagtaacaggatttgatgaaccaggataactctcctgtgttattct 124236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 99983 - 100152
Alignment:
Q  51 aagaattatataagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagca 149  Q
    |||||| ||| |||| || ||||||||||||||||| |||| || ||||||| |||||||||||| | ||| |||||||| ||||||||||||| ||||     
T  99983 aagaatcatagaagcttgttgaggttgataatacagagtgtaacagactgatttggtgtgatcaacatattatagtgctattcagaagtttctgatagc- 100081  T
Q  150 agaaaactatagtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    || | |||||| ||||||||||||||||  ||||||||||||||  ||||| |||| || ||||||||||||    
T  100082 aggatactataatggataatctcacacgtagtgtggggactggacatagcc-ggttaggcgaaccaggataa 100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 143169 - 143237
Alignment:
Q  48 gcaaagaattatataagcctgctgaggttgataatacaggtgttacggactgatctggtgtgatcaaga 116  Q
    |||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  143169 gcaaagaattgtagaagcctgctgaggttgataatacagtggttacggactgatctggtgtgatcaaga 143237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 14988 - 14830
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||| | ||| |||||||| ||||||||||||| ||||| || | |||||    
T  14988 aagcctgctgaggttgataatacagagtgtaacagactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggata-ctata 14890  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||||| |||| || ||||||||||||    
T  14889 gtggataatctcacacgtagtgtggggactggacgtagcc-ggttaggcgaaccaggataa 14830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 24604 - 24762
Alignment:
Q  62 aagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactata 160  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||||| |||| || | ||||||    
T  24604 aagcctgctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagc-aggatactata 24702  T
Q  161 gtggataatctcacacgaggtgtggggactggaagtagccgggtttggtgaaccaggataa 221  Q
    |||||||||||||||||  |||||||||||||| |||| | |||| || ||||||||||||    
T  24703 gtggataatctcacacgtagtgtggggactggacgtag-ctggttaggcgaaccaggataa 24762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 12698 - 12548
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtg 184  Q
    |||||||  ||||| |||||||||||||||||  || ||||| | || ||||||||||   | | | ||||||||||||||||||||||||||| ||||     
T  12698 aggtgttctggactaatctggtgtgatcaagaccttatagtgttggttagaagtttctaccaacta-aaaactatagtggataatctcacacgaagtgta 12600  T
Q  185 gggactggaagtagccgggtttggtgaaccaggataactctcctgtgttatt 236  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  12599 gggactggaagtagccggattgggtgaaccaggataactctcctatgttatt 12548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 2411 - 2259
Alignment:
Q  85 aggtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaa--gaaaactatagtggataatctcacacgaggtg 182  Q
    |||||||  |||||||||||||||||||||||  || ||||| | || ||||||||||   | |||  | | ||||||||||||||||||||| || |||    
T  2411 aggtgttctggactgatctggtgtgatcaagaccttatagtgttggttagaagtttct---accaactgtatactatagtggataatctcacaagaagtg 2315  T
Q  183 tggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 238  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  2314 tggggactagaagtagccggattgggtgaaccaggataactctcctgtgttattct 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 27246 - 27078
Alignment:
Q  48 gcaaagaattata-taagcctgctgaggttgataatacag-gtgttacggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgtt 145  Q
    |||||||||| || |||||||||||||||||||||||||| |||| ||| | |||||| |||||||||||||  | ||||| || | ||||||||||| |    
T  27246 gcaaagaattgtaataagcctgctgaggttgataatacagagtgtaacgaattgatctagtgtgatcaagaacatatagtgttattaagaagtttctgat 27147  T
Q  146 agcaagaaaactatag----tggataatctcacacgaggtgtggggactggaagtagccgggtttggtga 211  Q
    ||   | | |||||||    ||||||||||||||||| || |||||||||||||||||||  ||||||||    
T  27146 ag-ttggatactatagtggatggataatctcacacgaagtatggggactggaagtagccgactttggtga 27078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26356 - 26309
Alignment:
Q  1 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26356 cttaatagttttgagatagaaaattccaacctttcttttgctagtgtg 26309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 49501 - 49565
Alignment:
Q  159 tagtggataatctcacacgaggtgtggggactggaagtagccgg-gtttggtgaaccaggataact 223  Q
    ||||||||||||||||||  | |||||||| ||||||||||||| |||||| |||||| |||||||    
T  49501 tagtggataatctcacacttg-tgtggggagtggaagtagccggcgtttggcgaaccacgataact 49565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University