View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_high_28 (Length: 203)
Name: NF4107_high_28
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 23410995 - 23411170
Alignment:
| Q |
20 |
gccatagccatagcttcactaacactcctcattctcttcctccaaacccctaacacctgcgtcccatcagaagccccatccaaaccccacctccgcttcc |
119 |
Q |
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| T |
23410995 |
gccatagccatagcttcactaacactcctcattctcttcctccaaatccccaacacccgcgtcccatcagaagcaccatccaaaccccacctccgcttcc |
23411094 |
T |
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| Q |
120 |
ccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtctctgctcctc |
195 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23411095 |
ccaaatccacctgcgacttcacctccacccacctccacctcccctcccacaagaaaaacaaccgtctctggtcctc |
23411170 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 16538434 - 16538528
Alignment:
| Q |
101 |
aaaccccacctccgcttccccaaatccacctgcgacttcacctccacccgcctccacctcccctcccacaagaaaaacaaccgtctctgctcctc |
195 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||||| ||||| |
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| T |
16538434 |
aaaccccacttccgcttccctaaatccacctgcgacttcacctcctcccgccccagcctcccctccgacaagaaaaacaaccgtctctggtcctc |
16538528 |
T |
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