View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4107_high_7 (Length: 355)

Name: NF4107_high_7
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4107_high_7
NF4107_high_7
[»] chr6 (9 HSPs)
chr6 (17-346)||(896381-896710)
chr6 (106-261)||(1182299-1182454)
chr6 (110-169)||(897125-897183)
chr6 (134-263)||(1237376-1237511)
chr6 (16-106)||(1181825-1181908)
chr6 (204-264)||(1193243-1193303)
chr6 (17-106)||(1192749-1192832)
chr6 (219-260)||(793867-793908)
chr6 (17-45)||(1187101-1187129)
[»] chr4 (2 HSPs)
chr4 (17-106)||(10203224-10203306)
chr4 (204-264)||(10203831-10203891)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 896710 - 896381
Alignment:
Q  17 agttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacattaattataaacattttggagttaaatgcaccatcatctca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  896710 agttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacattaattataaatattttggagttaaatgcaccatcatctca 896611  T
Q  117 tccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataatactcattagag 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896610 tccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataatactcattagag 896511  T
Q  217 aacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaatctcagtatttcaaactaaaccaaacatcctaaaaccctg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896510 aacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaatctcagtatttcaaactaaaccaaacatcctaaaaccctg 896411  T
Q  317 actcatcattataccgtttcatagaataat 346  Q
    ||||||||||||||||||||||||||||||    
T  896410 actcatcattataccgtttcatagaataat 896381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 106 - 261
Target Start/End: Complemental strand, 1182454 - 1182299
Alignment:
Q  106 ccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataat 205  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1182454 ccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataat 1182355  T
Q  206 actcattagagaacacttatcactttatctcattttcttaaccaaatactcattag 261  Q
    ||| |||||||| |||||||||||||||| |||||||||||||| ||| |||||||    
T  1182354 acttattagagagcacttatcactttatcacattttcttaaccacatattcattag 1182299  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 897183 - 897125
Alignment:
Q  110 catctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaat 169  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  897183 catctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaat 897125  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 1237376 - 1237511
Alignment:
Q  134 actcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtata--------atactcattagagaacacttat 225  Q
    |||||||||||||||||||||||||||||| ||||| |  | || ||||| |||||||| ||||||||||        ||||||||||||||  || |||    
T  1237376 actcaatatgcaataacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctat 1237475  T
Q  226 cactttatctcattttcttaaccaaatactcattagag 263  Q
    |||  |||| |||||||||||||| |||||||||||||    
T  1237476 cac--tatcacattttcttaaccacatactcattagag 1237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 1181908 - 1181825
Alignment:
Q  16 cagttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacattaattataaacattttggagttaaatgcac 106  Q
    ||||||||||||||||||||||||||||   | |||||||||||  |||||   |||||||||||||||||||||||||||| ||||||||    
T  1181908 cagttttagatgataaacaaaatagagt--cagaactcacaagc--cacat---ataacattaattataaacattttggagtaaaatgcac 1181825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 1193303 - 1193243
Alignment:
Q  204 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 264  Q
    |||||||  ||||| ||||||||| || ||| |||||||||||||| ||||||||||||||    
T  1193303 atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga 1193243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 1192832 - 1192749
Alignment:
Q  17 agttttagatgataaac-aaaatagagttatacaactcacaagctacacataacataacattaattataaacattttggagttaaatgcac 106  Q
    ||||||||||||||||| ||||||||||  || ||||||||||| ||     ||||||||||||||||||| |||||  ||||||||||||    
T  1192832 agttttagatgataaacaaaaatagagt--tagaactcacaagccac-----acataacattaattataaatattttttagttaaatgcac 1192749  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 793867 - 793908
Alignment:
Q  219 cacttatcactttatctcattttcttaaccaaatactcatta 260  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  793867 cacttatcactttatcacattttcttaaccacatattcatta 793908  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 1187129 - 1187101
Alignment:
Q  17 agttttagatgataaacaaaatagagtta 45  Q
    |||||||||||||||||||||||||||||    
T  1187129 agttttagatgataaacaaaatagagtta 1187101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 10203306 - 10203224
Alignment:
Q  17 agttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacattaattataaacattttggagttaaatgcac 106  Q
    ||||||||||||||||||||||||||||| |  ||||||||||  |||| ||   ||||||||||||||||||||||||| |||||||||    
T  10203306 agttttagatgataaacaaaatagagttaga--actcacaagc--cacagaa---aacattaattataaacattttggagataaatgcac 10203224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 10203891 - 10203831
Alignment:
Q  204 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 264  Q
    ||||||| |||||| |||||||||||| ||| |||||| ||||||| ||||||||||||||    
T  10203891 atactcactagagagcacttatcacttcatcacatttttttaaccacatactcattagaga 10203831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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