View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_high_8 (Length: 341)
Name: NF4107_high_8
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 48065913 - 48066152
Alignment:
| Q |
19 |
atgtatgtggtctttatctttttactaagattgtaacttaccaagtttgtttgtggttctaaatgttataattttagctacaagttttttaaatttttca |
118 |
Q |
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| T |
48065913 |
atgtatgtggtctttatctttttactaagattgtaacttaccaagtttgtttgtggttctaaatgttataattttagctacaacttttttaaatttttca |
48066012 |
T |
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| Q |
119 |
cctaaaaaattgcaccttggaataggaggatttcccttcattcaaattttctaccgttcatgtatttgcattatcttctatggtgnnnnnnnnnnnncct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48066013 |
cctaaaaaattgcaccttggaataggaggatttcccttcattcaaattttctaccgttcatgtatttgcattatcttctatggtgtttttgttttttcct |
48066112 |
T |
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| Q |
219 |
caccccatattcaaattttgtcttttcctatcgtcatacg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
48066113 |
caccccatattcaaattttgtcttttcctatcgtcatacg |
48066152 |
T |
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