View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4107_low_1 (Length: 752)
Name: NF4107_low_1
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_1 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
| [»] scaffold0729 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 25 - 582
Target Start/End: Original strand, 15801672 - 15802229
Alignment:
| Q |
25 |
ggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcat |
124 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801672 |
ggatcatatggaaaagaatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcat |
15801771 |
T |
|
| Q |
125 |
gctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801772 |
gctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagag |
15801871 |
T |
|
| Q |
225 |
aaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccgtaagaat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801872 |
aaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccgtaagaat |
15801971 |
T |
|
| Q |
325 |
tctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgnnnnnnnacttttcccatctattggc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15801972 |
tctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgtttttttacttttcccatctattggc |
15802071 |
T |
|
| Q |
425 |
tgaaaattgtgggattcatcatctcacaagtgtttgtccaaagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattgggtaaggg |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802072 |
tgaaaattgtgggattcatcatctcacaagtgtttgtccaaagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattgggtaaggg |
15802171 |
T |
|
| Q |
525 |
tttaagcagaaattttatgtgttgctttttagttaccaaatagcaagttaaggattcc |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802172 |
tttaagcagaaattttatgtgttgctttttagttaccaaatagcaagttaaggattcc |
15802229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 12596413 - 12596727
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12596413 |
gtttaagggatcgtatggaaaaggatatatttcttgatatttgttgtttctttatcggtaaggatagtgcttatgttacagagatactaaatgggtgtga |
12596512 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctga-------tagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacg |
210 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12596513 |
tcttcaagcggatattggaataacagtgctgatacctgatagagagaagcctcataaaagttgaaaagaataacaagcttggaatgaatgctttgctaca |
12596612 |
T |
|
| Q |
211 |
agacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
12596613 |
agacatgggaagagaaattgttcgcgaaagttcacctgaggagcctgagaagtgtagtcgattgtggtgccatgaagatgtagttgatgtattgaccgac |
12596712 |
T |
|
| Q |
311 |
caaaccgtaagaatt |
325 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
12596713 |
cataccgtaagaatt |
12596727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 611 - 750
Target Start/End: Original strand, 15802258 - 15802397
Alignment:
| Q |
611 |
ctatggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgctttta |
710 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15802258 |
ctatggtctttctttgtgtcacagggaacaaaagccatcgagggattggttttgaagtcgcaaaggaccagtagagtttgcttcaatacaattgctctta |
15802357 |
T |
|
| Q |
711 |
agaaaatgaagaaattgcgattgttgcaacttgatgatgt |
750 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15802358 |
agaaaatgaagaaattgcgattgttgcaacttgataatgt |
15802397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 30416632 - 30416840
Alignment:
| Q |
36 |
aaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattgg |
135 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||| |||| |||||| |
|
|
| T |
30416632 |
aaaaggatatatttcttgacatatgttgtttctttatcggcaaggacagagcttatgttactgagattctaaatggctgtggactttttgctagtattgg |
30416731 |
T |
|
| Q |
136 |
aatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgt |
235 |
Q |
| |
|
|||| || || |||||| | |||||| |||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||| |
|
|
| T |
30416732 |
aatatctgtcctcatagagcggagcctcttaaaagttgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaattgttcgt |
30416831 |
T |
|
| Q |
236 |
gaaagttca |
244 |
Q |
| |
|
||| |||| |
|
|
| T |
30416832 |
caaaattca |
30416840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 20837164 - 20837369
Alignment:
| Q |
39 |
aggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaat |
138 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20837164 |
aggacatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatgggtgtggacttcatgctgatattggaat |
20837263 |
T |
|
| Q |
139 |
agaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaa |
238 |
Q |
| |
|
| | || |||||| | |||||| ||||||| ||||||||||||| |||||||||||| | | |||| |||||||||||||| ||||| | ||||| |
|
|
| T |
20837264 |
atctattctcatagagcgcagcctcgtaaaagtcgaaaagaataacacgcttggaatgcacgatttgctcagagacatgggaagatcaattgctggtgaa |
20837363 |
T |
|
| Q |
239 |
agttca |
244 |
Q |
| |
|
|||||| |
|
|
| T |
20837364 |
agttca |
20837369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 20810806 - 20811014
Alignment:
| Q |
36 |
aaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattgg |
135 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||| |
|
|
| T |
20810806 |
aaaaggacatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatgggtgtggacttcatgcttatagtgg |
20810905 |
T |
|
| Q |
136 |
aatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgt |
235 |
Q |
| |
|
|||| | || |||||| | |||||| ||||||| ||||||||||||| |||||||||||| | | |||| |||||||||||||| ||||| | || |
|
|
| T |
20810906 |
aatatctattctcatagagcgcagcctcgtaaaagtcgaaaagaataacacgcttggaatgcacgatttgctcagagacatgggaagatcaattgctggt |
20811005 |
T |
|
| Q |
236 |
gaaagttca |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
20811006 |
gaaagttca |
20811014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 3392982 - 3392537
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3392982 |
gtttaagcgatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggcaaggatagagcttatgttacaaagatactaaatggttgtgg |
3392883 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
3392882 |
acttcatgctgatattggaataacagtgttgatagagagaagcctcataaaagttgaaaagaataaaaagcttggaatgcatgatttgctacgagacatg |
3392783 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccg |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| || |||||| ||||||||| || || |||| |
|
|
| T |
3392782 |
ggaagggaaattgttcgtgaaagttcaccggaggagcctgagaagcgtacccgattgtggtgtcatgaggacgtagttaatgtactggaagaccataccg |
3392683 |
T |
|
| Q |
318 |
taagaat---tctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgnnnnnnnacttttccc |
414 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||| ||||| |||||| ||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
3392682 |
taagaatttctctacattgtattttgaatgtttgtcatctttcactatctttaaagataaca--aaaactatgtttcagaaatg--tatttacttttcca |
3392587 |
T |
|
| Q |
415 |
atctattggctgaaaattgtgggattcatcatctcacaagtgtttgtcca |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
3392586 |
atctattggctgaaaattgtgggattcattatctcacatgtgtctgtcca |
3392537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 3362901 - 3363347
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3362901 |
gtttaaaggatcgtatggaaaagaatatatttcttgatgtctgctgtttctttatcggtaaggatagagcttatgttacaaagatactaaatggttgtgg |
3363000 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
3363001 |
acttaatgctgatattggaataacagtgttgatagagagaagcctcataaaagttgaaaagaataaaaagcttggaatgcatgctttgctacgagacatg |
3363100 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccg |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| || | ||| ||||||||||| ||| || |||||| |||||||||| || | |||| |
|
|
| T |
3363101 |
ggaagggaaattgttcgtgaaagttcaccggaggagcctgaaaagcatacccgattgtggtgccatgaggacgtagttaatgtactggcagactataccg |
3363200 |
T |
|
| Q |
318 |
taagaatt---ctacattgcattttgaatttttgtcatccttcacgatctttgaagataaaaataaaactatgtttcagaaatgnnnnnnnacttttccc |
414 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| ||||| |||||| ||||||| | |||||||||||||||||||| | |||||| |
|
|
| T |
3363201 |
taagaatttcagtacattgcattttgaacttttgtcatttttcactatctttaaagataaca--aaaactatgtttcagaaatg--tttttaattttcca |
3363296 |
T |
|
| Q |
415 |
atctattggctgaaaattgtgggattcatcatctcac-aagtgtttgtcca |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| |||||| |||||| |
|
|
| T |
3363297 |
atctattggctgaaaattgtgggattcattatttcactaagtgtctgtcca |
3363347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 3313531 - 3313861
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||| |
|
|
| T |
3313531 |
gtttaagggatcatatggaaaaggatatatttcttgatgtgtgttgtttctttatcggtaaggatagagcatatgtcacaaatatactaaatggttgtgg |
3313630 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||||| | | || ||||||||| |
|
|
| T |
3313631 |
acttcatgctgatattggaataacagtgctgattgagcgaagcctaataaaaattgaaaagtataacaagcttggaatgcatgatttactgcgagacatg |
3313730 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgttttgaagatgtagttgatgtactggccgaacaaaccg |
317 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||| || |||| ||||||||||| | ||| |||||||||||||||||| |||| || || | |
|
|
| T |
3313731 |
ggacgagaaattgtccgtgaaagttcacctgaggagcctgaaaagcgtagtcgattgtggtatcatgaggatgtagttgatgtactgaccgaccatactg |
3313830 |
T |
|
| Q |
318 |
taagaat---tctacattgcattttgaattt |
345 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
3313831 |
taagaatttatctacattgcattttgaattt |
3313861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 3408716 - 3408490
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||||| | |||||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
3408716 |
gtttaaaggatgatatggtaaaggatatatttcttgacatttgttgtttctttattggtaaggacagggcctatgttacagagatactaaatggctgtgg |
3408617 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| |||||||||||||||||| || || ||||| | ||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||| |
|
|
| T |
3408616 |
actttatgctgatattggaatagcggtcctcatagaccggagcctcctaaaagttgagaagaataacaagcttggaatgcatgatttaataagagacatg |
3408517 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttca |
244 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
3408516 |
ggaagagaaattgtccgtgaaagttca |
3408490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 7166063 - 7165837
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
7166063 |
gtttaaaggatgatatggcaaaggatatatttcttgatatatgttgtttctttatcggcaaggatagagcctatgttactgagatactaaatggttgtgg |
7165964 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| ||||||| ||||||||| || || ||||| | ||||| | ||| |||||||||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
7165963 |
actttatgctgacattggaataacggtcctcgtagagcggagccttgtgaaaattgaaaagaataacaagcttggaatgcatgatttgcttagagacatg |
7165864 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttca |
244 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
7165863 |
ggaagagaaattgttcgccaaagttca |
7165837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 3287838 - 3287625
Alignment:
| Q |
31 |
tatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgat |
130 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| |||||||| ||| | ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
3287838 |
tatggaaaaggatatatttcttgacatttgttgtttctttattggtaaggacagaacctatgtcacagagatactaaatggctgtggacttgatgctgac |
3287739 |
T |
|
| Q |
131 |
attggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattg |
230 |
Q |
| |
|
| ||||||| ||| || ||||| | ||||||||||||||||| || |||||||||||| |||||||| | | || |||| |||||||||||||||| |
|
|
| T |
3287738 |
actggaataacagtcctcgtagagcggagcctcctaaaagttgacaattataacaagcttgaaatgcatgatttaataagagatatgggaagagaaattg |
3287639 |
T |
|
| Q |
231 |
ttcgtgaaagttca |
244 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3287638 |
ttcgtgaaagttca |
3287625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 3326379 - 3326154
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||| | |||||||||||||| || ||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
3326379 |
gtttaaaggatgatatggaaaaagatatatttcttgacatatgttgtttctttataggcaaggatagagccgaagttacagagatactaaatggctgtgg |
3326280 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| |||| ||||||||||| || || |||||| | ||||| ||||| ||||||||||||||||||||||||||||| | || || |||||||| |
|
|
| T |
3326279 |
actttatgcaaatattggaataagtgttctcatagagcggagccttgtaaaaattgaaaagaataacaagcttggaatgcattgtttgataagagacatg |
3326180 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttc |
243 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
3326179 |
ggaagagaaattattcgtgaaagttc |
3326154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 3263924 - 3263698
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||| || || |||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
3263924 |
gtttaaaggatggtatggaaaaggatatatttcttgacatatgttgtttctttatcggcaaagacagagcttacgtaacagagatacttaatggctgtgg |
3263825 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
||||||||||| ||||||||||| | || ||||| | ||||| ||||| | |||||||||||||| |||||||||||| | | || |||||||| |
|
|
| T |
3263824 |
acttcatgctgttattggaatagcgatcctcatagaacggagccttgtaaaaatggaaaagaataacaaaattggaatgcatgatttaataagagacatg |
3263725 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttca |
244 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
3263724 |
ggaagagaaattgtttgtgaaagttca |
3263698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 3399998 - 3399790
Alignment:
| Q |
36 |
aaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattgg |
135 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3399998 |
aaaaggacatatttcttgacatatgttgtttcttgattggaaagaacagagctgatgttacagagatacttaatgcatgtggacttcatgctgatattgg |
3399899 |
T |
|
| Q |
136 |
aatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgt |
235 |
Q |
| |
|
|||| | || |||||| | |||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||| ||||| | || |
|
|
| T |
3399898 |
aatatctattctcatagagcgcagcctcctaaaagtcgaaaagaataacaagcttggaatgcatgatttgctcagagacatgggaagagcaattgctggt |
3399799 |
T |
|
| Q |
236 |
gaaagttca |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
3399798 |
gaaagttca |
3399790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 615 - 750
Target Start/End: Complemental strand, 3392380 - 3392245
Alignment:
| Q |
615 |
ggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaa |
714 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
3392380 |
ggtctttctttgtgtcacagggaacaaaagccatcgagggattggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaa |
3392281 |
T |
|
| Q |
715 |
aatgaagaaattgcgattgttgcaacttgatgatgt |
750 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
3392280 |
aatgaagagattgagattgttgcaacttgataatgt |
3392245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 35 - 278
Target Start/End: Complemental strand, 3268605 - 3268362
Alignment:
| Q |
35 |
gaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattg |
134 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||| ||||||| || |||| |||| || |||||| ||||| |
|
|
| T |
3268605 |
gaaaaggatatatttcttgacatatgttgtttctttattggtaaggacagagcatatgtttcagagattatagatggttgtgacttttatgctggtattg |
3268506 |
T |
|
| Q |
135 |
gaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcg |
234 |
Q |
| |
|
||||| || || ||||||||||||||||||||| ||||||||| |||||| |||||||||||| | ||||| |||||||||||||||| |||||||| |
|
|
| T |
3268505 |
gaataactgtcctcatagagagaagcctcctaaaaattgaaaagagtaacaaacttggaatgcatagtttgctaagagacatgggaagagagattgttcg |
3268406 |
T |
|
| Q |
235 |
tgaaagttcacctgaggagcctgagaaacgtactcgattgtggt |
278 |
Q |
| |
|
| |||| ||| | ||||||| ||| |||| ||||||||||| |
|
|
| T |
3268405 |
taaaagatcaataaaagagcctgggaagcgtagtcgattgtggt |
3268362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 615 - 750
Target Start/End: Original strand, 3363504 - 3363639
Alignment:
| Q |
615 |
ggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaagaa |
714 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
3363504 |
ggtctttctttgtgtcacagggaacaaaagccatcgagggattggttatgaagttgccaaagaccaatagagtttgctttgatacaattgcttttgagaa |
3363603 |
T |
|
| Q |
715 |
aatgaagaaattgcgattgttgcaacttgatgatgt |
750 |
Q |
| |
|
||||| | |||| ||||||||||||||||| |||| |
|
|
| T |
3363604 |
aatgattagattgagattgttgcaacttgataatgt |
3363639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 13786319 - 13786545
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| ||||| ||||| | |||||||||| | |||||||||||||| ||| |||| | ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
13786319 |
gtttaatggatgatatggtaaaggctgtatttcttgacatatgttgtttctttattggtgaggacaaagcctatgttacagagatactaaatggctgtgg |
13786418 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| ||||||||||||||||| || || |||||| | |||||| |||||||||| | ||||||| |||||||||||| | || |||||||| |
|
|
| T |
13786419 |
actttgtgctgatattggaatagctgtcctcatagagcggagcctcttaaaagttgaggacaataacacccttggaatgcataagttaataagagacatg |
13786518 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttca |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13786519 |
ggaagagaaattgttcgtgaaagttca |
13786545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 31174549 - 31174746
Alignment:
| Q |
35 |
gaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattg |
134 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| || || ||| | |||||| |||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
31174549 |
gaaaaggatatatttcttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatggctgtgggcttcatgctgatattg |
31174648 |
T |
|
| Q |
135 |
gaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgtt |
232 |
Q |
| |
|
|||||| || || || ||| | |||||| |||||||||| || |||||||||||| |||||||| | |||| ||||||||||||||| ||||||| |
|
|
| T |
31174649 |
gaatagttgtcctcattgagcgcagcctcataaaagttgataaaaataacaagcttcaaatgcatgatttgctcagagacatgggaagagcaattgtt |
31174746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 612 - 750
Target Start/End: Original strand, 3314192 - 3314328
Alignment:
| Q |
612 |
tatggtctttctttgtgttacagggaacaaaagccatcgagggattggttttgaagttgcaaaggaccagtagagtttgcttcaatacaattgcttttaa |
711 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||| || |||| | |||| | |
|
|
| T |
3314192 |
tatggtctttct--gtgtcacagggaacaaaagccatcgagggattggttatgaagttgcaaaggtccagtagagttggtttcgatgcaatcggttttga |
3314289 |
T |
|
| Q |
712 |
gaaaatgaagaaattgcgattgttgcaacttgatgatgt |
750 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
3314290 |
gaaaatgaagagattgagattgttgcaacttgatcatgt |
3314328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 43 - 278
Target Start/End: Original strand, 13807603 - 13807838
Alignment:
| Q |
43 |
tatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaatagaa |
142 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| | ||||| |||||| ||||||| ||| |||| ||||||||| |||||||||| |||||| |
|
|
| T |
13807603 |
tatatttcttgacatttgttgtttctttatcggaaagaagagagcctatgtttcagagattctagatggttgtggacttaatgctgatatgggaataact |
13807702 |
T |
|
| Q |
143 |
gtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagtt |
242 |
Q |
| |
|
| || |||||| | ||||| |||||||| ||||||||| | || ||||||||||||| | | |||||||||||||||||||| |||||| || |||| | |
|
|
| T |
13807703 |
atcctcatagagcggagccttctaaaagtcgaaaagaatgataaacttggaatgcatggtttactacgagacatgggaagagagattgtttgtaaaagat |
13807802 |
T |
|
| Q |
243 |
cacctgaggagcctgagaaacgtactcgattgtggt |
278 |
Q |
| |
|
|| ||||||| || ||| |||| ||||||||||| |
|
|
| T |
13807803 |
cagaagaggagcttgggaagcgtagtcgattgtggt |
13807838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 518
Target Start/End: Original strand, 3363373 - 3363425
Alignment:
| Q |
465 |
aagtttttggagaagttagttcatgagaaaaatgtcattttatatatgattggg |
518 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3363373 |
aagtttttggaga-gttagttcatgagaatgatgtcattttatatataattggg |
3363425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 518
Target Start/End: Complemental strand, 3392510 - 3392459
Alignment:
| Q |
466 |
agtttttggagaagttagttcatgagaaaaatgtcattttatatatgattggg |
518 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3392510 |
agtttttggaga-gttagttcatgagaatgatgtcattttatatataattggg |
3392459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 7634 - 7426
Alignment:
| Q |
36 |
aaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattgg |
135 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||| ||||| | || |||||||| |||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
7634 |
aaaaggctatatttcttgatgtatgttgtttctttatcggcaaggacaaagactatgttaccgagatactaaatggttgtggactttttgctgatattgg |
7535 |
T |
|
| Q |
136 |
aatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgt |
235 |
Q |
| |
|
||||| || || |||||||| ||||| |||||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||||| ||||| |
|
|
| T |
7534 |
aatagctgtcctcatagagaggagccttctaaaagtcgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaatagttcgc |
7435 |
T |
|
| Q |
236 |
gaaagttca |
244 |
Q |
| |
|
| ||||||| |
|
|
| T |
7434 |
ggaagttca |
7426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 6907226 - 6907020
Alignment:
| Q |
38 |
aaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattggaa |
137 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||| ||||||||||| || ||||||||| ||||| ||| |||| |
|
|
| T |
6907226 |
aaggctatatttcttgatgtatgttgtttctttatcggcaaggacagagactatgttaccgagatactaaacggttgtggactttttgctggtataggaa |
6907127 |
T |
|
| Q |
138 |
tagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
237 |
Q |
| |
|
||| || || |||||||| ||||| |||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| |
|
|
| T |
6907126 |
tagctgtcctcatagagaggagccttttaaaagttgaaaagaataacaagcttggaatgcatgatttaataagagacatgggaagagaaattgttcgtgg |
6907027 |
T |
|
| Q |
238 |
aagttca |
244 |
Q |
| |
|
||||||| |
|
|
| T |
6907026 |
aagttca |
6907020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 32412359 - 32412133
Alignment:
| Q |
18 |
gtttaagggatcgtatggaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtgg |
117 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||| | |||| |||||||||||| ||||| || || |||||||| |||||||||||||| |||| |
|
|
| T |
32412359 |
gtttaaaggatgatatggaaaaggatatatttcttgacatatgttttttctttatcggcaaggacagggcctatgttaccaagatactaaatgggcgtgg |
32412260 |
T |
|
| Q |
118 |
acttcatgctgatattggaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatg |
217 |
Q |
| |
|
|||| ||||||| ||||||||| || || |||| ||||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
32412259 |
actttatgctgacattggaataacggttctcgtagaacgaagccttgtaaaaattgaaaagaataacaaacttggaatgcatgatctgctaagagacatg |
32412160 |
T |
|
| Q |
218 |
ggaagagaaattgttcgtgaaagttca |
244 |
Q |
| |
|
|||||||||||||| ||| | |||||| |
|
|
| T |
32412159 |
ggaagagaaattgtccgtcagagttca |
32412133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 14768296 - 14768056
Alignment:
| Q |
36 |
aaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttat-gttacagagatactaaatgggtgtggacttcatgctgatattg |
134 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||| || ||||||||||| || |||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
14768296 |
aaaaggatatatttcttgacatatgttttttctttattggcaaggatagagcctaacgttacagagatattaaatggatgtggactttatgctgatattg |
14768197 |
T |
|
| Q |
135 |
gaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcg |
234 |
Q |
| |
|
||||| || || ||||| | |||||| ||||||||| |||||||||||||||| |||||||| | || || | |||||||||||||||||||| || |
|
|
| T |
14768196 |
gaatatctgtcctcatagaacggagcctcttaaaagttgtaaagaataacaagcttcaaatgcatgatttgatatgggacatgggaagagaaattgtccg |
14768097 |
T |
|
| Q |
235 |
tgaaagttcacctgaggagcctgagaaacgtactcgattgt |
275 |
Q |
| |
|
| |||||||||| | ||||||| || |||| |||||||| |
|
|
| T |
14768096 |
tcaaagttcaccaaaagagcctggaaagcgtagtcgattgt |
14768056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 8373109 - 8372864
Alignment:
| Q |
35 |
gaaaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatgggtgtggacttcatgctgatattg |
134 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| || || ||| | |||| | |||| |||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
8373109 |
gaaaaggatatatttcttgacatatgttgtttcttcattggaaagaacagagttgatgtcacagagatccttaatggttgtggacttcatgctgatattg |
8373010 |
T |
|
| Q |
135 |
gaatagaagtgctgatagagagaagcctcctaaaagttgaaaagaataacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcg |
234 |
Q |
| |
|
|| || || || |||||| | |||||| |||||||||| |||||||||||| || ||||||| | | ||||| ||||||||||||| ||| || | |
|
|
| T |
8373009 |
gagtatctgttcttatagagcgtagcctcataaaagttgataagaataacaagtttcagatgcatgatttactacgcgacatgggaagagcaatcgtcag |
8372910 |
T |
|
| Q |
235 |
tgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgt |
280 |
Q |
| |
|
||||||||| | | |||||||| || | || ||||||||||||| |
|
|
| T |
8372909 |
cgaaagttcagcaaaagagcctgaaaagcatagtcgattgtggtgt |
8372864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 5693 - 5645
Alignment:
| Q |
177 |
agaataacaagcttggaatgcatgctctgctacgagacatgggaagaga |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
5693 |
agaataacaagcttggaatgcatgttctgctacaagccatggcaagaga |
5645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 4351891 - 4351975
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgta |
266 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| ||||||||||| |||||| |
|
|
| T |
4351891 |
aacaagcttggcatgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgaggaacgta |
4351975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 6792936 - 6792984
Alignment:
| Q |
177 |
agaataacaagcttggaatgcatgctctgctacgagacatgggaagaga |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
6792936 |
agaataacaagcttggaatgcatgttctgctacaagccatggcaagaga |
6792984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 4135122 - 4135079
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagaga |
225 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
4135122 |
aacaagcttggaatgcatgatttgctacgagatatgggaagaga |
4135079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 323
Target Start/End: Original strand, 4334214 - 4334355
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgagaaacgtactcgattgtggtgtt |
281 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| |||||||||| |||||| | | ||||||| | |
|
|
| T |
4334214 |
aacaagcttggcatgcatgatttgcttcgagatatgggaagagaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttc |
4334313 |
T |
|
| Q |
282 |
ttgaagatgtagttgatgtactggccgaacaaaccgtaagaa |
323 |
Q |
| |
|
||| ||||| |||||||| || | ||||| || ||||||| |
|
|
| T |
4334314 |
atgaggatgtgcttgatgtattgtcagaacatactgtaagaa |
4334355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 4359072 - 4359149
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaagttcacctgaggagcctgag |
259 |
Q |
| |
|
||||||||||| ||||||| | |||| ||||| |||||||||||||| ||||||| | ||||| ||||||||||| |
|
|
| T |
4359072 |
aacaagcttggcatgcatgatttgctccgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgag |
4359149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 5261486 - 5261431
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
237 |
Q |
| |
|
|||| |||||||||||||| | || | ||||| ||||||||||||||||||||||| |
|
|
| T |
5261486 |
aacatgcttggaatgcatggtttgttgcgagatatgggaagagaaattgttcgtga |
5261431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 5285485 - 5285430
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
237 |
Q |
| |
|
|||| |||||||||||||| | |||| ||||| |||||||||| |||||||||||| |
|
|
| T |
5285485 |
aacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga |
5285430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 5075071 - 5075014
Alignment:
| Q |
182 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtgaaa |
239 |
Q |
| |
|
||||||||||||||||||| | |||| || || |||||||||||||| ||||||||| |
|
|
| T |
5075071 |
aacaagcttggaatgcatgatttgctgcgtgatatgggaagagaaatcattcgtgaaa |
5075014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 31060229 - 31060156
Alignment:
| Q |
37 |
aaaggatatatttcttgatgtctgttgtttctttatcggtaaggatagagcttatgttacagagatactaaatg |
110 |
Q |
| |
|
||||||||||||| |||| | ||||||||||| || || ||| | |||||| |||||||||||||||| |||| |
|
|
| T |
31060229 |
aaaggatatattttttgacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatg |
31060156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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