View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4107_low_14 (Length: 330)
Name: NF4107_low_14
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 105 - 315
Target Start/End: Original strand, 6550462 - 6550665
Alignment:
| Q |
105 |
gacataacaatcttgaagttattctttataattgtgtgataaacttggaagattttgcttacaagttctgtttgttctttgtagtgttcatctttaggaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6550462 |
gacataacaatcttgaagttattctttataattgtgtgataaacttggaagattttgcttacaagttctgtttgttctttgtagtgttcatctttaggaa |
6550561 |
T |
|
| Q |
205 |
gcaaaactactgaattgactactctacccttctatgctgtgatcaaaagatatatagaacaagtttataagtttacttttttgttacatagatatatctg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6550562 |
gcaaaactactgaattgactactctacccttctatgctgtgatcaaaagatatatagaa-------ataagtttacttttttgttacatagatatatctg |
6550654 |
T |
|
| Q |
305 |
catattgtgag |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
6550655 |
catattgtgag |
6550665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6550358 - 6550395
Alignment:
| Q |
1 |
cctccactttagtgcattgattacaggttgcatgattg |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6550358 |
cctccactttagtgcattgattacaggttgcatgattg |
6550395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 49062414 - 49062326
Alignment:
| Q |
148 |
cttggaagattttgcttacaagttctgtttgttctttgtagtgtt----catctttaggaagcaaaactactgaattgactactctaccc |
233 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
49062414 |
cttggaagattta-cttacaagttctgtttgttctttgtgtttttttttcatctttaggaagcaaaactagtgaattacctactctaccc |
49062326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University