View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_18 (Length: 297)
Name: NF4107_low_18
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 14773766 - 14773487
Alignment:
| Q |
9 |
tgcagtttttgttcatgacaggtgaccactta------agttcataataccagcatatgatagaaactatggattaccttttttaacattataaggatag |
102 |
Q |
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| T |
14773766 |
tgcagtttttgttcatgacaggtgaccacttatattaaagttcataataccagcatatgatagaaactatggattaccttttttaacattataaggatag |
14773667 |
T |
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| Q |
103 |
gtttccctattaaattattacttggtgcctttgatgtatataaaatcaaaaattataactcgttttcgtggatttttagctcctaagcaacttttcaaca |
202 |
Q |
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| T |
14773666 |
gtttccctattaaattattacttggtgcctttgttgtatataaaataaaaaattataactcgttttcgtggatttttagctcataagcaacttttcaaca |
14773567 |
T |
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| Q |
203 |
tttgatatcaaaagcatttagaaaaactcaattgtgcatttggatgattcctaaaacaactaataggccgaagatcacag |
282 |
Q |
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| T |
14773566 |
tttgatatcaaaagcatttagaaaaactcaattgtgcatttggatgattcctaaaacaactaataggccgaagatcacag |
14773487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 15015536 - 15015349
Alignment:
| Q |
1 |
tgtgacattgcagtttttgttcatgacaggtgac-cacttaagttcataataccagcatatgatagaaactatggattaccttttttaa---cattataa |
96 |
Q |
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| T |
15015536 |
tgtgacattgcagtttttgttcatgacaggtgacatattgaagtacataatatcagcatatgatagaaattatggattacattttttcatgttattataa |
15015437 |
T |
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| Q |
97 |
ggataggtttccctattaaattattacttggtgcctttgatgtatataaaatcaaaaattataactcgttttcgtggatttttagctc |
184 |
Q |
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| T |
15015436 |
gcataggtttcactattaaattattacctggtgcctttgatgcatataaactaaaaaattataacttgtttccatagatttttagctc |
15015349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 103 - 269
Target Start/End: Complemental strand, 17880505 - 17880334
Alignment:
| Q |
103 |
gtttccctattaaattattacttggtgcctttgatgtatataaaatcaaaaattataactcgttttcgtggatttttagctc---ctaagcaacttttca |
199 |
Q |
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| T |
17880505 |
gtttcactattaaattattacttggtgcctttggtgtatataaactaaaaaattataacttgtttccgtggatttttagctcataataagcaacttttca |
17880406 |
T |
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| Q |
200 |
acatttgatatcaaaagcatttagaaaaactcaattgtgcatttggatga--ttcctaaaacaactaatagg |
269 |
Q |
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| T |
17880405 |
acatccgaaatcaaaagcatttagaaaaacatcattatgcatttggatgaacttcctaaaacaacttatagg |
17880334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15048273 - 15048236
Alignment:
| Q |
1 |
tgtgacattgcagtttttgttcatgacaggtgaccact |
38 |
Q |
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| T |
15048273 |
tgtgacattgcaatttttgtttatgacaggtgaccact |
15048236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36876558 - 36876592
Alignment:
| Q |
1 |
tgtgacattgcagtttttgttcatgacaggtgacc |
35 |
Q |
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| T |
36876558 |
tgtgacattgcagtttttgtccatgacaggtgacc |
36876592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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