View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_2 (Length: 509)
Name: NF4107_low_2
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 22 - 482
Target Start/End: Original strand, 26303626 - 26304086
Alignment:
| Q |
22 |
caaagtatcagaaaaagatagatgacatgttactcaacaatataagtagtggagaatcaaaggacatagcataacagagattcaaaatggaaggaactta |
121 |
Q |
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| T |
26303626 |
caaagtatcagaaaaagatagatgacatgttactcaacaatataagtagtggagaatcaaaggacatagcataacagagattcaaaatggaaggaactta |
26303725 |
T |
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| Q |
122 |
gcaaaacattatgatgatatataaaaacaacagagcaaagagtgagagagttgaggaaggtacctgttgggaaatgaagaagaattttattttctttcat |
221 |
Q |
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| T |
26303726 |
gcaaaacattatgatgatatataaaaacaacagagcaaagagtgagagagttgaggaaggtacctgttgggaaatgaagaagaattttattttctttcat |
26303825 |
T |
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| Q |
222 |
tttggtccctaaggacacatcaacaagctagttgaccttcataactgacacgccaccaattttaatgacttaacgtcccactttaacgtcaaagactaaa |
321 |
Q |
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| T |
26303826 |
tttggtccctaaggacacatcaacaagctagttgaccttcatacctgacacgccaccaattttaatgacttaacgtcccactttaacgtcaaagactaaa |
26303925 |
T |
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| Q |
322 |
atgactaactgagtgcaaattggaggattaatttgtgattttgtttgagtcatagactaaattgatgacgcgttacacttttagggactaaaatggtagt |
421 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26303926 |
atgactaactgagtgcaaaatggaggattaatttgtgattttgtttgagtcatagactaaattgatgacgcgttgcacttttagggactaaaatggtagt |
26304025 |
T |
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| Q |
422 |
ttgcccaataatcatttactattctctacccacattcactaaccttgcaatgcaaatgtca |
482 |
Q |
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| T |
26304026 |
ttgcccaataatcatttactattctctacccacattcactaaccttgcaatgcaaatgtca |
26304086 |
T |
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