View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_20 (Length: 280)
Name: NF4107_low_20
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 29169286 - 29169043
Alignment:
| Q |
19 |
tccagattccagaatctattatatttttcataaacaattatgttgttttaaatgaaagagggnnnnnnnnnnnncgcattagattttgtttaatttttca |
118 |
Q |
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| T |
29169286 |
tccagattccagaatctattatatttttcataaacaattatgttgttttaaatgaaagagggaaaaaaaa----cgcattagatttcgtttaagttttca |
29169191 |
T |
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| Q |
119 |
aaattctccattgaattgaatgttaaactatttaaacaattggtatactcaaattgttaacgagtttcggttcaagtcgatttcgtggagagtactaaag |
218 |
Q |
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| T |
29169190 |
aaattctccattgaattgaatgttaaactatttaaacaattggtatactcaaattgttaacgagtttcggttcaagtcgatttggtggagagtactaaag |
29169091 |
T |
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| Q |
219 |
gtcaaattcttacaataacaatatttagttaaacttcacttttatttt |
266 |
Q |
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| T |
29169090 |
gtcaaattcttacaaaaataatatttagttaaacttcacttttatttt |
29169043 |
T |
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