View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_21 (Length: 278)
Name: NF4107_low_21
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 16162571 - 16162476
Alignment:
| Q |
11 |
cacagacacagaggaagacataaaagataactgagacatcagcaactacaaattaaaaagataaaagaaacatgtcataatctaacatacactgca |
106 |
Q |
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| T |
16162571 |
cacacacacaggggaagacataaaagataactgagacatcagcaaccacaaattaaaaagataaaagaaacatgtcataatctaacatacactgca |
16162476 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 16162428 - 16162334
Alignment:
| Q |
154 |
gaatctatatgaacttgcaataaaaataatcaaacacgccacccatccaaaatcatagcatgcaacatcacccatgagaaataccacagggattg |
248 |
Q |
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| T |
16162428 |
gaatctatatgaacctgcaataagaataatcaaacacgccacccatccaaaatcatagcatgcaacatcgcccatgagaaataccacagggattg |
16162334 |
T |
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