View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_28 (Length: 238)
Name: NF4107_low_28
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16626351 - 16626149
Alignment:
| Q |
1 |
ttacatcattctagcatgaaatctggattctttaaaagtagcgtttagcacacattaaaacaacacaataaaacttatggattctttactatgtttgatg |
100 |
Q |
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| T |
16626351 |
ttacatcattctagcatgaaatctggattctttaaaagtagtgtttagcacacattaaaacaacacaataaaacttatggattctttactatgtttgatg |
16626252 |
T |
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| Q |
101 |
gatattaaaaaactaaatagaacatggcatgaagtaaaaaatgcagaacatttaagttccagaaaaaattatggaaccaaacaacataaaagtaggaata |
200 |
Q |
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| T |
16626251 |
gatattaaaaaactaaatagaacatggcatgaagtaaaaaatgcagaacatttaacttccaaaaaaaattatggaaccaaacaacataaaagtaggaata |
16626152 |
T |
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| Q |
201 |
gta |
203 |
Q |
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||| |
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| T |
16626151 |
gta |
16626149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 56239583 - 56239663
Alignment:
| Q |
63 |
acacaataaaacttatggattctttactatgtttgatggatattaaaaaactaaatagaacatggcatgaagtaaaaaatgc |
144 |
Q |
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| T |
56239583 |
acacaacaaaacgtatggattctttactatgtttgatgcaaatt-aaaaataaaacagaacacggcataaagtaaaaaatgc |
56239663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 23945990 - 23946068
Alignment:
| Q |
63 |
acacaataaaacttatggattctttactatgtttgatggatattaaaaaactaaatagaacatggcatgaagtaaaaaat |
142 |
Q |
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| T |
23945990 |
acacaacaaaatgtatggattctttactatgtttgatgcaaatt-aaaaataaaacagaacacggcataaagtaaaaaat |
23946068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 16106951 - 16106873
Alignment:
| Q |
63 |
acacaataaaacttatggattctttactatgtttgatggatattaaaaaactaaatagaacatggcatgaagtaaaaaat |
142 |
Q |
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|||||| ||||| ||||||||||||||||||||||||| | ||| ||||| ||| |||||| ||||| ||||||||||| |
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| T |
16106951 |
acacaacaaaacgtatggattctttactatgtttgatgcaaatt-aaaaataaaacagaacacggcataaagtaaaaaat |
16106873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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