View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4107_low_29 (Length: 238)
Name: NF4107_low_29
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 4178299 - 4178138
Alignment:
| Q |
17 |
ataatactcacaaaattaaaagtacatcgttaataaggtatgtacattgtcttagatttgtaatgttcaaattaattattctcttattcaattaatagcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4178299 |
ataatactcacaaaattaaaagtacatcgttaataaggtatgtacattgtcttagatttgtaatgttcaaattaattactctcttatttaattaatagcg |
4178200 |
T |
|
| Q |
117 |
tgaagtcgtttgtgacccaccaactttgttgaaagttcaaactgatttcatatataaattac |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4178199 |
tgaagtcgtttgtgacccaccaactttgttgaaagttcaaactgatttcatatataaattac |
4178138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University