View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4107_low_3 (Length: 475)

Name: NF4107_low_3
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4107_low_3
NF4107_low_3
[»] chr4 (3 HSPs)
chr4 (1-460)||(34621654-34622110)
chr4 (243-305)||(49219128-49219190)
chr4 (175-212)||(41162203-41162240)
[»] chr1 (3 HSPs)
chr1 (243-305)||(12564893-12564955)
chr1 (168-203)||(6933118-6933153)
chr1 (262-325)||(47020515-47020579)
[»] chr5 (4 HSPs)
chr5 (243-327)||(21768193-21768278)
chr5 (173-212)||(14257346-14257385)
chr5 (172-210)||(30845201-30845239)
chr5 (173-213)||(11095603-11095643)
[»] chr8 (2 HSPs)
chr8 (168-203)||(31167861-31167896)
chr8 (166-211)||(7026605-7026650)
[»] chr7 (3 HSPs)
chr7 (168-203)||(31691271-31691306)
chr7 (243-305)||(10190784-10190846)
chr7 (245-305)||(44151499-44151559)
[»] chr2 (1 HSPs)
chr2 (168-203)||(6772696-6772731)
[»] chr6 (4 HSPs)
chr6 (173-214)||(30865355-30865396)
chr6 (243-279)||(2112189-2112225)
chr6 (244-327)||(3168257-3168341)
chr6 (243-295)||(28660789-28660841)
[»] scaffold0024 (1 HSPs)
scaffold0024 (243-279)||(27565-27601)
[»] chr3 (3 HSPs)
chr3 (168-212)||(2201000-2201044)
chr3 (171-203)||(4534500-4534532)
chr3 (243-299)||(47904088-47904144)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 34621654 - 34622110
Alignment:
Q  1 acccttcggtcaatgtgagctaacccctattagtaccttatactcttccaaccaggatccacacctctcatgttaaaattcactattcactatggtgtga 100  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  34621654 acccttcggtcaatgtgagctaaacactattagtacattatactcttccaaccaggatccacacctctcatgttaaaattcactat-------ggtgtga 34621746  T
Q  101 aaattgtgtacattttatatttatatccaatgatgta-aaaactgtgagtatcttttatctccaacacgactctgtttggataaacaacttaactaagca 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  34621747 aaattgtgtacattttatatttatatccaatgatgtataaaactgtgagtatcttttatctccaacatgactctgtttggataaacaacttaactaaaca 34621846  T
Q  200 cttacaacataagttatttctacaacaaaagctataagctacattcatataaactataaattgttttcataacctatctttacgagcttacggaaataag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34621847 cttacaacataagttatttctacaacaaaagctataagctacagtcatataaactataaattgttttcataacgtatctttacgagcttacggaaataag 34621946  T
Q  300 ttgaaacagtccatggacatgtcataagtaaacaaactcaaata-------------aagtcatagactcctatcaacatttgtaaacatttaccaaaga 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||| ||| ||||||||||||||||||||| |    
T  34621947 ttgaaacagtccatggacatgtcataagtaaacaaactcaaataaatcaatccaaacaagtcatagactcctgtcagcatttgtaaacatttaccaaa-a 34622045  T
Q  387 gaaaaagaataaagaacgaatgattgaaattagacaaataagacattacatcatcccaaatggaagtgatattt 460  Q
    || ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34622046 gagaa---------aacgaatgattgaaattagacaaataagacattacatcatcccaaatggaagtgatattt 34622110  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 49219128 - 49219190
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 305  Q
    ||||||||| |||||| |||||||||||| ||||||| | ||| ||| ||||||||| |||||    
T  49219128 ttcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaa 49219190  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 41162240 - 41162203
Alignment:
Q  175 tttggataaacaacttaactaagcacttacaacataag 212  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  41162240 tttggataaacaacttaattaagcacttataacataag 41162203  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 12564955 - 12564893
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 305  Q
    ||||||||| |||||| |||||||||||| ||||||||  | ||||||||||||||| |||||    
T  12564955 ttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaa 12564893  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 6933153 - 6933118
Alignment:
Q  168 gactctgtttggataaacaacttaactaagcactta 203  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6933153 gactctgtttggataaacaacttaattaagcactta 6933118  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 47020515 - 47020579
Alignment:
Q  262 gttttcataacctatctttacgagcttacggaaataagttg-aaacagtccatggacatgtcata 325  Q
    |||||||||| |||||||   |||||||||||||||||||| ||||||   ||||||||||||||    
T  47020515 gttttcataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtcata 47020579  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 21768278 - 21768193
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttg-aaacagtccatggacatgtcataag 327  Q
    |||||||||||| |||  |||||||||||  |||||| | ||||||||| |||||||||| ||||||   ||||||||||||||||    
T  21768278 ttcatataaactttaagctgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataag 21768193  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 14257346 - 14257385
Alignment:
Q  173 tgtttggataaacaacttaactaagcacttacaacataag 212  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttataacataag 14257385  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 30845201 - 30845239
Alignment:
Q  172 ctgtttggataaacaacttaactaagcacttacaacata 210  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttataacata 30845239  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 11095643 - 11095603
Alignment:
Q  173 tgtttggataaacaacttaactaagcacttacaacataagt 213  Q
    |||||||||||||||||||||||| ||||||| | ||||||    
T  11095643 tgtttggataaacaacttaactaaacacttaccatataagt 11095603  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 31167861 - 31167896
Alignment:
Q  168 gactctgtttggataaacaacttaactaagcactta 203  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31167861 gactctgtttggataaacaacttaattaagcactta 31167896  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 7026605 - 7026650
Alignment:
Q  166 acgactctgtttggataaacaacttaactaagcacttacaacataa 211  Q
    ||||| ||||||||||||||||||||| |||||| ||||| |||||    
T  7026605 acgaccctgtttggataaacaacttaattaagcatttacagcataa 7026650  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 31691306 - 31691271
Alignment:
Q  168 gactctgtttggataaacaacttaactaagcactta 203  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31691306 gactctgtttggataaacaacttaattaagcactta 31691271  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 10190784 - 10190846
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 305  Q
    |||||||||||| |||||||||||||||| ||||  |||  |||||| ||||||| |||||||    
T  10190784 ttcatataaactgtaaattgttttcataaactattcttaaaagcttatggaaatacgttgaaa 10190846  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 44151559 - 44151499
Alignment:
Q  245 catataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa 305  Q
    ||||||| |||||| |||||||||||| ||||||| |  |||||| ||||||||| |||||    
T  44151559 catataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaa 44151499  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 6772731 - 6772696
Alignment:
Q  168 gactctgtttggataaacaacttaactaagcactta 203  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6772731 gactctgtttggataaacaacttaattaagcactta 6772696  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 30865355 - 30865396
Alignment:
Q  173 tgtttggataaacaacttaactaagcacttacaacataagtt 214  Q
    |||||||||||||||||||| |||||| ||| ||||||||||    
T  30865355 tgtttggataaacaacttaattaagcatttataacataagtt 30865396  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 2112189 - 2112225
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctt 279  Q
    |||||||||||||||| |||||||||||| |||||||    
T  2112189 ttcatataaactataagttgttttcataaactatctt 2112225  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 3168341 - 3168257
Alignment:
Q  244 tcatataaactataaattgttttcataacctatctttacgagcttacggaaataagttgaaa-cagtccatggacatgtcataag 327  Q
    |||||||| ||||||| ||||||| ||| ||||| |   ||||||| ||||||||| ||||| ||| | ||||||||||||||||    
T  3168341 tcatataagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 3168257  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 28660841 - 28660789
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaa 295  Q
    |||||||||| |||||||||||||||||| ||||| |||  |||||| |||||    
T  28660841 ttcatataaattataaattgttttcataaactatccttaaaagcttatggaaa 28660789  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 27565 - 27601
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctt 279  Q
    |||||||||||||||| |||||||||||| |||||||    
T  27565 ttcatataaactataagttgttttcataaactatctt 27601  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 2201000 - 2201044
Alignment:
Q  168 gactctgtttggataaacaacttaactaagcacttacaacataag 212  Q
    ||||||||| ||||||||||||||||||||| |||| | ||||||    
T  2201000 gactctgttaggataaacaacttaactaagcgcttatagcataag 2201044  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 4534532 - 4534500
Alignment:
Q  171 tctgtttggataaacaacttaactaagcactta 203  Q
    |||||||||||||||||||||| ||||||||||    
T  4534532 tctgtttggataaacaacttaattaagcactta 4534500  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 47904144 - 47904088
Alignment:
Q  243 ttcatataaactataaattgttttcataacctatctttacgagcttacggaaataag 299  Q
    ||||||||| |||||| | |||||||||| ||||| | | |||||||||||||||||    
T  47904144 ttcatataatctataagtggttttcataagctatcgtgaagagcttacggaaataag 47904088  T

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