View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_31 (Length: 237)
Name: NF4107_low_31
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15801060 - 15801285
Alignment:
| Q |
1 |
caaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattta |
100 |
Q |
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| T |
15801060 |
caaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattta |
15801159 |
T |
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| Q |
101 |
caagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801160 |
caagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaac |
15801259 |
T |
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| Q |
201 |
gggcactcgttatacttgatgatgtc |
226 |
Q |
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| T |
15801260 |
gggcacttgttatacttgatgatgtc |
15801285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3312926 - 3313150
Alignment:
| Q |
1 |
caaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattta |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||| |
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| T |
3312926 |
caaagtcatctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagagaagtttgggagaaagataggggtagaatcgattta |
3313025 |
T |
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| Q |
101 |
caagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaac |
200 |
Q |
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| T |
3313026 |
caagaacaacttctttcagatatcctcaaaacaaggaagataaaggtgcatagtgttgagtttggaaaagctatgattaaggaacgacttgtcacaaaac |
3313125 |
T |
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| Q |
201 |
gggcactcgttatacttgatgatgt |
225 |
Q |
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||||||| ||| ||||||||||||| |
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| T |
3313126 |
gggcacttgttgtacttgatgatgt |
3313150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3393584 - 3393395
Alignment:
| Q |
1 |
caaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattta |
100 |
Q |
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||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| |||||| |
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| T |
3393584 |
caaagtcatatacaatgatctttgttatgaatttgaagatcaaagcttcgttgctaatattagagaagtttgggagaaagataggggcagaatcgattta |
3393485 |
T |
|
| Q |
101 |
caagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactt |
190 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||| ||||||||||||||||| |||||||| |
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| T |
3393484 |
caagaacaacttctttcagatatcctgaaaacaagaaagataaaggtgcttagtgttgagcaaggaaaagctatgatcaagcaacgactt |
3393395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3362299 - 3362478
Alignment:
| Q |
1 |
caaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattta |
100 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||| |
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| T |
3362299 |
caaagtcatctacaatgatctttgttatgaatttgaaaatcaaagcttccttgctaatattagagaagtttgggagaaagataggggcagaatcgattta |
3362398 |
T |
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| Q |
101 |
caagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaa |
180 |
Q |
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||||||||| |||||||||||||||| ||||||||||| ||||||||| || ||||||| |||||| |||||||||| |
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| T |
3362399 |
caagaacaatttctttcagatatcctcaaaacaagaaagataaaggtgcttagtgttgagcaaggaaaaactatgatcaa |
3362478 |
T |
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