View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_5 (Length: 439)
Name: NF4107_low_5
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 4161153 - 4161562
Alignment:
| Q |
13 |
aatataactactgcttctcctcacatgtctgccactgctttgctgcaaaaagcatcacaaataggtgtaacgacagtgagtaaaacagaaccttgtagac |
112 |
Q |
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| T |
4161153 |
aatataaccactgcttctcctcacatgtctgccactgctttgctgcaaaaagcatcacaaataggtgtaacgacagtgagtaaaacagaaccttgtagac |
4161252 |
T |
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| Q |
113 |
cccacttaatgcaaactcacgtgccttcaggaatggttatgccttcacgtgaagaaataggaactactggtttttctcattgtttggcttcttatgggaa |
212 |
Q |
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| T |
4161253 |
cccacttaatgcaaactcacgtgccttcaggaatggttatgccttcacgtgaagaaataggaaccactggtttttctcattgtttggcttcttatgggaa |
4161352 |
T |
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| Q |
213 |
taaagctgcaataacttctgattgctttgaagaatcttcttctcttttgcatgatgtgatgtatggtagtgagagttcacattcacaatttgaagctgtt |
312 |
Q |
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| T |
4161353 |
taaagctgcaataacttctgattgctttgaagaatcttcttctcttttgcatgatgtgatgtatggtagtgagagttcacattcacaatttgaagctgtt |
4161452 |
T |
|
| Q |
313 |
actgctgctatgagcatgaggggaatgtttgatacacaaagagataataataactttgaggaacaatattcccattttggtaaaagcaacattataaaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161453 |
actgctgctatgagcatgaggggaatgtttgatacacaaagagataataataactttgaggaacaatattcccattttggtaaaagcaacattataaaga |
4161552 |
T |
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| Q |
413 |
atggtggtgc |
422 |
Q |
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|||||||||| |
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| T |
4161553 |
atggtggtgc |
4161562 |
T |
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