View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4107_low_8 (Length: 376)
Name: NF4107_low_8
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4107_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 22274916 - 22275198
Alignment:
| Q |
17 |
aaactatattattaatttttcaccaaaattgcaaaatgtgtggaagattaacctatttcaaagatgtatgtatgaaagcttgtggatcaacaaattatat |
116 |
Q |
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| T |
22274916 |
aaactatattatcaatttt-caccaaaattgcaaaatgtgtggaagactaacctatttcaaagatgtatgtatgaaagcttgtggatcaacaaattatat |
22275014 |
T |
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| Q |
117 |
agttagtgaatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttatagtagttaagagttagttacatccacttcaaacta |
216 |
Q |
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| T |
22275015 |
agttagtgaatgtctatgctagtaactagtaaagttaatgtgatagctatttcctattttgttttagtagttaagagttagttacatccacttcaaacta |
22275114 |
T |
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| Q |
217 |
actgattgtgaagggcaacttataaataaaaccgataggtaagtgtagctagctactatcagtatgataggatgatcatttttgtgag |
304 |
Q |
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| T |
22275115 |
actgattgtgaagggcaaattataaataaaaccgataggtaagtg----tagctactatcagtatgataggatgatcatttttgtgag |
22275198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 22276301 - 22276366
Alignment:
| Q |
301 |
tgagaagaattcattacgtatgtgatataaagttttggtacacgtccgttcgtagtactagtatta |
366 |
Q |
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| T |
22276301 |
tgagaagaattcattacgtatgtgatataaagttccggtacacgtcggttcgtagtactaatatta |
22276366 |
T |
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