View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4107_low_9 (Length: 369)

Name: NF4107_low_9
Description: NF4107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4107_low_9
NF4107_low_9
[»] chr2 (8 HSPs)
chr2 (14-168)||(32565380-32565534)
chr2 (14-168)||(32806565-32806719)
chr2 (14-168)||(32815002-32815156)
chr2 (14-168)||(32309301-32309455)
chr2 (14-139)||(32799640-32799765)
chr2 (14-163)||(28215617-28215766)
chr2 (14-163)||(28220458-28220604)
chr2 (125-168)||(32305344-32305387)
[»] chr6 (3 HSPs)
chr6 (14-168)||(301447-301601)
chr6 (211-302)||(301644-301735)
chr6 (299-351)||(301778-301830)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 32565534 - 32565380
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32565534 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcataga 32565435  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32565434 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggtaa 32565380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 32806719 - 32806565
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32806719 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcataga 32806620  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32806619 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggtaa 32806565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 32815156 - 32815002
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32815156 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcataga 32815057  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  32815056 gaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggtaa 32815002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 32309301 - 32309455
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32309301 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcataga 32309400  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  32309401 gaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggtaa 32309455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 32799765 - 32799640
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32799765 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcataga 32799666  T
Q  114 gaccttgcaccttctcttcttcgtct 139  Q
    ||||||||||||||||||||||||||    
T  32799665 gaccttgcaccttctcttcttcgtct 32799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 28215766 - 28215617
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||  |||||||| ||||||||||||||||||| |||| ||||||||||    
T  28215766 agatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcataga 28215667  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215666 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca 28215617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 28220458 - 28220604
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||  |||||||| ||||||||||||||||||| |||||| ||||||||    
T  28220458 agatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttactttaatcataga 28220557  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca 163  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  28220558 gacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatcca 28220604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 32305344 - 32305387
Alignment:
Q  125 ttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggtaa 32305387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 301447 - 301601
Alignment:
Q  14 agatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgtttgttccgctgttaccgatatctactttgatcataga 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  301447 agatggttccaatcttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcataga 301546  T
Q  114 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  301547 gaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaa 301601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 301644 - 301735
Alignment:
Q  211 tgtgaaaatggagtctttattgttcttcagttatgtggtggaaacgaggtgtctttatttttgtgcattttgcatccaagatcataaattta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  301644 tgtgaaaatggagtctttattgttcttcagttatgtggtggaaacgaggtgtctttatttttgtgcattttgcatccaagattataaattta 301735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 301778 - 301830
Alignment:
Q  299 tttacaggctctatgaaatagtgaatattgatatcctaaattttacaggctct 351  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  301778 tttataggctctatgaaatagtgaatattgatatcctaaattttacaggctct 301830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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