View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4108_high_7 (Length: 224)

Name: NF4108_high_7
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4108_high_7
NF4108_high_7
[»] chr7 (3 HSPs)
chr7 (1-224)||(36389770-36389998)
chr7 (1-68)||(46611489-46611556)
chr7 (1-94)||(5906997-5907090)
[»] chr1 (5 HSPs)
chr1 (1-84)||(33323889-33323973)
chr1 (25-92)||(50959520-50959587)
chr1 (11-85)||(18628950-18629024)
chr1 (32-89)||(16256462-16256519)
chr1 (22-90)||(26925112-26925180)
[»] chr6 (2 HSPs)
chr6 (1-89)||(31304018-31304106)
chr6 (75-115)||(32191181-32191220)
[»] chr8 (3 HSPs)
chr8 (23-89)||(10659190-10659256)
chr8 (2-68)||(41940070-41940136)
chr8 (3-68)||(5950110-5950175)
[»] chr4 (4 HSPs)
chr4 (22-89)||(41839734-41839801)
chr4 (32-89)||(44136799-44136856)
chr4 (23-84)||(44206994-44207055)
chr4 (3-84)||(21121639-21121720)
[»] chr3 (1 HSPs)
chr3 (1-83)||(47005812-47005894)
[»] chr5 (1 HSPs)
chr5 (10-89)||(12566899-12566978)
[»] chr2 (2 HSPs)
chr2 (14-68)||(9848119-9848173)
chr2 (19-83)||(35114566-35114630)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36389998 - 36389770
Alignment:
Q  1 agcataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtttttgaaacaca 100  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  36389998 agcataaattgctcctttgagcaaacaacgtgtaagaacccggatcgaaggatgagtcaagtacgtcatcaaccagaccctttgaggtttttgaaacaca 36389899  T
Q  101 accactgcaaaaagatcctcaatctaaagcccgccaatccatgtatgaa-----aacaaaaaacaatatgtcggagaaccacaacaacaaaagtcccccg 195  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||     ||||||||||||  ||||||||||||||||||||||||| ||||||    
T  36389898 accactgcaaaaagattctcaatctaaagcctgccaatccatgtatgaacaaacaacaaaaaacaacctgtcggagaaccacaacaacaaaagccccccg 36389799  T
Q  196 acggcaaacaaacggcaaccgatgaaaac 224  Q
    |||||||||||||||||||||||||||||    
T  36389798 acggcaaacaaacggcaaccgatgaaaac 36389770  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46611489 - 46611556
Alignment:
Q  1 agcataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtca 68  Q
    |||||||  |||||||| |||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  46611489 agcataagatgctctttcgagcaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtca 46611556  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5907090 - 5906997
Alignment:
Q  1 agcataaattgctcttttgagcaa-acaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtttttga 94  Q
    |||||||| |||||||| |||||| ||||||  ||||| |||  ||| ||||||||||||| ||||| |  || |||||||||||||||||||||    
T  5907090 agcataaaatgctctttcgagcaagacaacgcataagatctcatatcgagggatgagtccaatacgttagtaa-tagaccctttcaggtttttga 5906997  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33323973 - 33323889
Alignment:
Q  1 agcataaattgctcttttgagcaaa-caacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttc 84  Q
    |||||||| |||||||||||||||| ||||| |||||||||| |||| ||||||||||||| |||||||| ||| | ||||||||    
T  33323973 agcataaaatgctcttttgagcaaaacaacgcgtaagaactcagatcgagggatgagtccaatacgtcattaaccataccctttc 33323889  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 50959520 - 50959587
Alignment:
Q  25 acaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggttttt 92  Q
    |||||| |||||||||| |||| ||||||||||||| |||||||  ||| |||||||||| |||||||    
T  50959520 acaacgcgtaagaactcagatcgagggatgagtccaatacgtcagtaaccagaccctttctggttttt 50959587  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 18628950 - 18629024
Alignment:
Q  11 gctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttca 85  Q
    ||||||| || ||||||||| |||||||||| |||  ||||||||||||| |||||||  ||| |||||||||||    
T  18628950 gctctttcgatcaaacaacgcgtaagaactcagattgagggatgagtccaatacgtcagtaaccagaccctttca 18629024  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 16256519 - 16256462
Alignment:
Q  32 gtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    |||||||||| |||| ||||||||||||| ||||||| |||  |||||||||| ||||    
T  16256519 gtaagaactcagatcgagggatgagtccaatacgtcagcaaacagaccctttcgggtt 16256462  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 26925112 - 26925180
Alignment:
Q  22 caaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggttt 90  Q
    ||||||||| |||||||||| |||| ||||||||||||| ||| |||  ||| | ||||||||| ||||    
T  26925112 caaacaacgcgtaagaactcagatcgagggatgagtccaatacatcagtaaccataccctttcacgttt 26925180  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31304106 - 31304018
Alignment:
Q  1 agcataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    |||||||| || |||||| |||||||||| ||||||||||| |||| |||||||||| || |||||||  ||| |||||||||| ||||    
T  31304106 agcataaaatgttcttttaagcaaacaacatgtaagaactcagatcgagggatgagttcaatacgtcagtaaccagaccctttcgggtt 31304018  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 32191220 - 32191181
Alignment:
Q  75 agaccctttcaggtttttgaaacacaaccactgcaaaaaga 115  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  32191220 agaccctttcaggtttt-gaaactcaaccactgcaaaaaga 32191181  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 10659190 - 10659256
Alignment:
Q  23 aaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    |||||||| |||||||||| |||| ||||||||||||| ||||||| |||| |||| ||||||||||    
T  10659190 aaacaacgcgtaagaactcagatcgagggatgagtccaatacgtcagcaaccagactctttcaggtt 10659256  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 41940070 - 41940136
Alignment:
Q  2 gcataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtca 68  Q
    ||||||| |||||||| |||||||||||| |||| ||||| |||| |||||||||| || |||||||    
T  41940070 gcataaaatgctctttcgagcaaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtca 41940136  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5950110 - 5950175
Alignment:
Q  3 cataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtca 68  Q
    |||||| |||||||| ||||||||||||||||| |||||  ||| |||||||||| || |||||||    
T  5950110 cataaaatgctctttcgagcaaacaacgtgtaaaaactcaaatcgagggatgagttcaatacgtca 5950175  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 41839734 - 41839801
Alignment:
Q  22 caaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    |||||||||  ||||||||| |||| ||||||||||||| |||||||  ||| |||||||||||||||    
T  41839734 caaacaacgcataagaactcagatcgagggatgagtccaatacgtcagtaacaagaccctttcaggtt 41839801  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 44136856 - 44136799
Alignment:
Q  32 gtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    ||||||||||||||| ||||||||||||| |||||||  ||| |||||||||| ||||    
T  44136856 gtaagaactcggatcgagggatgagtccaatacgtcagtaaccagaccctttcgggtt 44136799  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 44206994 - 44207055
Alignment:
Q  23 aaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttc 84  Q
    |||||||| |||||||||| |||| | ||||||||||| ||||||| |||| ||||||||||    
T  44206994 aaacaacgcgtaagaactcagatcgatggatgagtccaatacgtcaacaaccagaccctttc 44207055  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 21121720 - 21121639
Alignment:
Q  3 cataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttc 84  Q
    |||||| |||||||| ||||||||||||||||| |||||  ||  |||||||||| || |||| ||  ||| ||||||||||    
T  21121720 cataaaatgctctttcgagcaaacaacgtgtaaaaactcaaattgagggatgagttcaatacgccagaaaccagaccctttc 21121639  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47005812 - 47005894
Alignment:
Q  1 agcataaattgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagacccttt 83  Q
    ||||||||  ||||||| |||||| ||||| |||||||||  |||| ||||||||||||| |||||||  ||| |||||||||    
T  47005812 agcataaaaagctctttcgagcaagcaacgcgtaagaactaagatcgagggatgagtccaatacgtcagtaaccagacccttt 47005894  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 12566978 - 12566899
Alignment:
Q  10 tgctcttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagaccctttcaggtt 89  Q
    |||||||| || ||||||||| |||| ||||| |||| |||||||||| || |||||||  ||| || ||||||||||||    
T  12566978 tgctctttcgaacaaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaaccaggccctttcaggtt 12566899  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 9848173 - 9848119
Alignment:
Q  14 cttttgagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtca 68  Q
    |||| |||||| ||||| |||||||||| |||| ||||||||||||| |||||||    
T  9848173 ctttcgagcaagcaacgcgtaagaactcagatcgagggatgagtccaatacgtca 9848119  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 35114566 - 35114630
Alignment:
Q  19 gagcaaacaacgtgtaagaactcggatctagggatgagtccagtacgtcatcaactagacccttt 83  Q
    |||||| ||||| |||||| |||||||| ||||||||||| | |||||||  ||| |||||||||    
T  35114566 gagcaagcaacgcgtaagagctcggatcaagggatgagtctaatacgtcaataaccagacccttt 35114630  T

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