View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4108_low_1 (Length: 479)
Name: NF4108_low_1
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4108_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 40955571 - 40956024
Alignment:
| Q |
17 |
agaaatcacttggatgatgattgtttagtatgaatttatannnnnnnaatgaaataagtattggtatattttttggcgacaaaattagtgatagtatacn |
116 |
Q |
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| T |
40955571 |
agaaatcacttggatgatgattgtttagtatgaatttatatttttttaatgaaataagtattggtatattttttggcgacaaaattagtaatagtatact |
40955670 |
T |
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| Q |
117 |
nnnnnnaaaatgaacatgtattagttttagtacccctcaagnnnnnnngtattagtattagnnnnnnnnnn----atcaaagtttagtaattagtatact |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
40955671 |
tttttttaaatgaacatgtattagttttagtacccctcaagaaaaaa-gtattagtattagtttgttttttttttatcaaagtttagtaattagtatact |
40955769 |
T |
|
| Q |
213 |
atattgacaaaatattttgacaaaatttgtaattaagcctactatataaacgataggattgggttgaccgacattttgagttgaatttggagtcatggtc |
312 |
Q |
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| T |
40955770 |
atattgacaaaatattttgacaaaatttgtaattaagcctactatataaacgataggattgggttgaccgatattttgagttgaatttggagtcatggtc |
40955869 |
T |
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| Q |
313 |
atgcatggttgctagctgctgcttccactatatttctcaccaactaactaatcttagttttagtccaattctatccacacatgcatctaccaaccaagca |
412 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40955870 |
atgcatggttgct----gctgcttccactatatttctcaccaactaactaatcttagttttagtccaattccatccacacatgcatctaccaaccaagca |
40955965 |
T |
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| Q |
413 |
agacacaatcctatggtgccaagctgcaaaatcataaacgctcaataataagtataatc |
471 |
Q |
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| T |
40955966 |
agacacaatcctatggtgccaagctgcaaaatcataaacgctcaataataagtataatc |
40956024 |
T |
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