View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4108_low_2 (Length: 418)
Name: NF4108_low_2
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4108_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 3283494 - 3283699
Alignment:
| Q |
4 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataatta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
3283494 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagataatactgtcatagaaaatctctgatttttgcttaataatta |
3283593 |
T |
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| Q |
104 |
ctattttgatcaatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacctaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3283594 |
ctattttgatcaatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacccaa |
3283693 |
T |
|
| Q |
204 |
atattg |
209 |
Q |
| |
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|||||| |
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| T |
3283694 |
atattg |
3283699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 206 - 418
Target Start/End: Original strand, 3283735 - 3283947
Alignment:
| Q |
206 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgcggctatagccacacacagccctatggtgaatctgtccctgattagaaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283735 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgtggctatagccacacacagccctatggtgaatctgtccctgattagaaac |
3283834 |
T |
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| Q |
306 |
aaacacaagttttctttaaagtttgaacaacaaaaaagttgcccattgccaaatatgtgtatgtatatacgactcaaaagattagttgattagtcaaatc |
405 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283835 |
aaacacaagttttctttaaagtttgaacaacgaaaaagttgcccattgccaaatatatgtatgtatatacgactcaaaagattagttgattagtcaaagg |
3283934 |
T |
|
| Q |
406 |
gactcacatcttt |
418 |
Q |
| |
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||||||||||||| |
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| T |
3283935 |
gactcacatcttt |
3283947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 3267954 - 3267983
Alignment:
| Q |
323 |
aaagtttgaacaacaaaaaagttgcccatt |
352 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
3267954 |
aaagtttgaacaacaaaaaagttgcccatt |
3267983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 1175537 - 1175640
Alignment:
| Q |
4 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataatta |
103 |
Q |
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|
||||||||||||||||||||||||||| | ||||| ||| ||| ||||| ||||||| | || |||||||||||| |||||| |||||||||||| ||| |
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| T |
1175537 |
atactaaaaataagaaataataatgtttgtctctacaaa--acagaaaaattaagagacaata-tgtcatagaaaaactctgaattttgcctaatactta |
1175633 |
T |
|
| Q |
104 |
ctatttt |
110 |
Q |
| |
|
||||||| |
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|
| T |
1175634 |
ctatttt |
1175640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 18633945 - 18633987
Alignment:
| Q |
68 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18633945 |
tgtcatagaaaaactctgatttttgcctaataattactatttt |
18633987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4700550 - 4700596
Alignment:
| Q |
1 |
attatactaaaaataagaaataataatgttcgcctctagaaagcaca |
47 |
Q |
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||||||||||||||||||||||||| |||| | || ||||||||||| |
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| T |
4700550 |
attatactaaaaataagaaataatattgtttgtctttagaaagcaca |
4700596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 4701258 - 4701303
Alignment:
| Q |
117 |
tatacatcaatttatggttctaggttcgattccttgaacctaattt |
162 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||| |||||| |
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|
| T |
4701258 |
tatacatcaagttatggttctaggtttgattccttaaacttaattt |
4701303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 1175744 - 1175780
Alignment:
| Q |
117 |
tatacatcaatttatggttctaggttcgattccttga |
153 |
Q |
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||||||||||||||| ||||||||||||||| ||||| |
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| T |
1175744 |
tatacatcaatttatagttctaggttcgattacttga |
1175780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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