View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4108_low_3 (Length: 366)

Name: NF4108_low_3
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4108_low_3
NF4108_low_3
[»] chr6 (2 HSPs)
chr6 (17-296)||(5750008-5750287)
chr6 (21-296)||(19408873-19409148)
[»] chr1 (2 HSPs)
chr1 (17-296)||(45676302-45676581)
chr1 (17-46)||(17873520-17873549)
[»] chr3 (2 HSPs)
chr3 (19-217)||(31162463-31162660)
chr3 (292-359)||(29450942-29451009)
[»] chr2 (6 HSPs)
chr2 (139-296)||(35295590-35295747)
chr2 (17-115)||(35295744-35295842)
chr2 (148-238)||(15606633-15606723)
chr2 (17-110)||(20692487-20692580)
chr2 (61-122)||(2209431-2209492)
chr2 (148-224)||(19131512-19131588)
[»] chr4 (2 HSPs)
chr4 (148-236)||(26631909-26631997)
chr4 (148-238)||(7803826-7803916)
[»] chr7 (1 HSPs)
chr7 (148-238)||(14245042-14245132)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 5750287 - 5750008
Alignment:
Q  17 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagatacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5750287 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagatacc 5750188  T
Q  117 accacacacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatcttt 216  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5750187 accacacgcagccttcgatggaataccatcggctgcaccatctgtgttacatttaatccagtcaaatataggtggatgccataagacttcaatgatcttt 5750088  T
Q  217 ggtgccttaggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct 296  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  5750087 ggtgccttaggtggatgaatagcaatattaaaagttttacgaatactaaactcagttatactattacaagcagctttgct 5750008  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 19408873 - 19409148
Alignment:
Q  21 catggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccacca 120  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19408873 catggctcttgataactcagcaaataatgaggatcctaaacccaagttttgagcaaaacaacctatatattcagcttcgttgtttctgaagataccacca 19408972  T
Q  121 cacacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtg 220  Q
    | | ||   |||||||||||||||||||||||||||||| |||| ||||| || |||||||| |||||||||||| | ||||||| |||||| ||||| |    
T  19408973 cgcgcagttttcgatggaataccaccggctgcaccatctatgttgcattttatacagtcaaatataggtggatgcgagaagacttaaatgatttttgggg 19409072  T
Q  221 ccttaggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct 296  Q
    ||||||| || ||||||| ||||||||||||||||  |||||||| |||| |||||  ||||||||||| ||||||    
T  19409073 ccttagggggttgaatagaaatattaaaagttttatgaatactaatctcaattatagaattacaagcagatttgct 19409148  T

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Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 45676581 - 45676302
Alignment:
Q  17 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagatacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  45676581 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttaagcaaaacaacctatacattcagcttcgttgtttcttaagatacc 45676482  T
Q  117 accacacacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatcttt 216  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676481 accacacgcagccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatcttt 45676382  T
Q  217 ggtgccttaggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct 296  Q
     |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  45676381 agtgccttaggtggatgaatagcaatattaaaagttttaagaatactaaactcagttatactattacaagaagctttgct 45676302  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 17873520 - 17873549
Alignment:
Q  17 cctgcatggctcctgataattcagcaaata 46  Q
    ||||||||||||||||||||||||||||||    
T  17873520 cctgcatggctcctgataattcagcaaata 17873549  T

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Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 31162463 - 31162660
Alignment:
Q  19 tgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccac 118  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  31162463 tgcatggctcctgataattcagcaaataaagaggatcttaaatccaagttttgatcaaaacaacctatacattcagcttcgttgtttatgaagataccac 31162562  T
Q  119 cacacacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttg 217  Q
    |||||||| |||| ||||||||||||||||||  |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  31162563 cacacacatcctttgatggaataccaccggctagaccatctgtg-tgcatttaatccagtcaaaaataggtggatgccataagacttcaatgagctttg 31162660  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 29450942 - 29451009
Alignment:
Q  292 ttgctatcctatttagtgcttaactaacgcttgctgatccttgctacttggccacggttcatcctttg 359  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29450942 ttgctatcctatttagtgcttaactaacgcttgttgatccttgctacttggccacggttcatcctttg 29451009  T

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Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 139 - 296
Target Start/End: Complemental strand, 35295747 - 35295590
Alignment:
Q  139 ataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag 238  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  35295747 atacaaccggttgcaccatctgtgttacatttaatccagtcaaaaataggtggaagccataagacttcaatgatctttggggccttaggtggatgaatag 35295648  T
Q  239 caatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct 296  Q
    |||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  35295647 caatattaaaagttttaagaatactaaactcaattatagaattacaagcagctttgct 35295590  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 35295842 - 35295744
Alignment:
Q  17 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagatac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35295842 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacccatacattcagcttcgttgtttctgaagatac 35295744  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 15606633 - 15606723
Alignment:
Q  148 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag 238  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |  ||||| || ||| | || ||||| |||||||||||||    
T  15606633 gctgctccatctgtgttgcatttaatccaatcaaaaataggaggatgccagacaacttctattatcatgggagcctttggaggatgaatag 15606723  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 20692580 - 20692487
Alignment:
Q  17 cctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaa 110  Q
    ||||||| || ||||||||||||||||||||||| || |||  ||| || || |||||||| |||||||||||   |||||| | |||||||||    
T  20692580 cctgcatagcacctgataattcagcaaataaagatgaacctggacctaaattctgagcaaagcaacctatacaaagagcttcttggtttctgaa 20692487  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 2209492 - 2209431
Alignment:
Q  61 cccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccaca 122  Q
    ||||||||||||||||| ||||  || |||||| |||| ||||| ||||||||||| |||||    
T  2209492 cccaagttttgagcaaagcaactcatgcattcaccttccttgttcctgaagatacctccaca 2209431  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 19131588 - 19131512
Alignment:
Q  148 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgcctt 224  Q
    ||||| || ||||| |||||||||||||| |||||||| || || ||||| |  |||||||| |||||||| |||||    
T  19131588 gctgctccgtctgtattacatttaatccaatcaaagatgggcgggtgccaaagaacttcaattatctttggagcctt 19131512  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 26631909 - 26631997
Alignment:
Q  148 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaat 236  Q
    |||| |||||||||||| ||||||||||| | ||||||| | |||||||||||||||||||||||  |||| |  || |||||||||||    
T  26631909 gctgaaccatctgtgttgcatttaatccattgaaagataaggggatgccataagacttcaatgattcttggagttttgggaggatgaat 26631997  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 7803826 - 7803916
Alignment:
Q  148 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag 238  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |  |||||  | ||| | || ||||| |||||||||||||    
T  7803826 gctgctccatctgtgttgcatttaatccaatcaaatataggaggatgccagacaacttcttttatcatgggagcctttggaggatgaatag 7803916  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 14245042 - 14245132
Alignment:
Q  148 gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag 238  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||| |  ||||| || || || || || || |||||||||||||    
T  14245042 gctgcaccatctgtgttgcatttaatccagtcaaagataggagggtgccagacaacttctattattttgggagcttttggaggatgaatag 14245132  T

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