View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4108_low_4 (Length: 359)

Name: NF4108_low_4
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4108_low_4
NF4108_low_4
[»] chr8 (2 HSPs)
chr8 (16-347)||(45342931-45343262)
chr8 (94-274)||(44730154-44730334)
[»] chr2 (22 HSPs)
chr2 (96-322)||(39153050-39153276)
chr2 (108-331)||(44624764-44624987)
chr2 (94-312)||(39216658-39216876)
chr2 (89-322)||(44895065-44895298)
chr2 (89-276)||(39472722-39472909)
chr2 (96-322)||(39138637-39138860)
chr2 (96-312)||(39396617-39396833)
chr2 (108-321)||(39196487-39196700)
chr2 (94-312)||(39371118-39371336)
chr2 (98-318)||(39205709-39205929)
chr2 (94-322)||(39380457-39380685)
chr2 (94-324)||(39421149-39421376)
chr2 (108-312)||(39387471-39387675)
chr2 (94-279)||(39412992-39413174)
chr2 (98-309)||(39223715-39223926)
chr2 (128-321)||(44615398-44615594)
chr2 (96-257)||(39478260-39478420)
chr2 (89-309)||(39099591-39099811)
chr2 (226-308)||(39604321-39604403)
chr2 (226-309)||(39126490-39126573)
chr2 (179-282)||(39188802-39188905)
chr2 (230-283)||(39144626-39144679)
[»] chr7 (1 HSPs)
chr7 (96-312)||(19808904-19809117)
[»] chr5 (2 HSPs)
chr5 (89-343)||(17060616-17060870)
chr5 (98-321)||(33562281-33562504)
[»] chr6 (1 HSPs)
chr6 (96-344)||(16114336-16114584)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 45343262 - 45342931
Alignment:
Q  16 atagagacaaaggaaagatactggtgaatgactaaaggatttctaaattagaataccagaaacttcatttgcaacagatatcttgtgctgaacaacagat 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343262 atagagacaaaggaaagatactggtgaatggctaaaggatttctaaattagaataccagaaacttcatttgcaacagatatcttgtgctgaacaacagat 45343163  T
Q  116 acaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343162 acaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtat 45343063  T
Q  216 ttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttctaggag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45343062 ttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttctaggag 45342963  T
Q  316 atagatgtgcctttcactaataatcacaggtt 347  Q
    ||||||||||||||||||||||||||||||||    
T  45342962 atagatgtgcctttcactaataatcacaggtt 45342931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 274
Target Start/End: Complemental strand, 44730334 - 44730154
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||| | |||||||||| |  |||||||  |||||||||||  ||||||  |||||||||||  || ||| | |||||||| |||||| || |||    
T  44730334 tatcttgtgttcaacaacagatgcgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgaga 44730235  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaa 274  Q
    || | | | || |||||||||||| |||| | |||||||||||||||| |||||||||| || ||||| ||||||||||||    
T  44730234 acctcctaagaattttcagtattttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa 44730154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 39153276 - 39153050
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||||| |||| ||| ||| ||||||| ||||||||||||||||||    
T  39153276 tcttgtgttgagcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaac 39153177  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagatt 295  Q
       ||| || |||||||||||| |||| |  ||||||||||| ||| |||| || || |||||||||||||||||||||||||||||  | ||  |||||    
T  39153176 caccaaagaattttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagatt 39153077  T
Q  296 ctcatcagttgttctaggagatagatg 322  Q
    ||||||||||||||||| ||| |||||    
T  39153076 ctcatcagttgttctagcagaaagatg 39153050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 108 - 331
Target Start/End: Complemental strand, 44624987 - 44624764
Alignment:
Q  108 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 207  Q
    |||||||| |||||||||   |||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | |||  | ||    
T  44624987 caacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataatt 44624888  T
Q  208 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 307  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||| |    
T  44624887 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttt 44624788  T
Q  308 tctaggagatagatgtgcctttca 331  Q
    ||||| ||||||||| | ||||||    
T  44624787 tctagcagatagatgcggctttca 44624764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 312
Target Start/End: Complemental strand, 39216876 - 39216658
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||| | |||||||||||| |||| ||| ||||||||||| ||| |||||||| |||    
T  39216876 tatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgaga 39216777  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaaga 293  Q
    ||   ||| || |||| ||||||| |  ||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||   ||  |||    
T  39216776 accaccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgaga 39216677  T
Q  294 ttctcatcagttgttctag 312  Q
    || ||||||||||||||||    
T  39216676 ttttcatcagttgttctag 39216658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 89 - 322
Target Start/End: Original strand, 44895065 - 44895298
Alignment:
Q  89 acagatatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaac 188  Q
    |||| ||||||||||||| ||||| || ||||||||||||| |||||  ||| ||| |||||||||| |||| ||| ||||||||||| |||||||||||    
T  44895065 acagctatcttgtgctgagcaacaaatgcaaaaagctccaaaacttcgccttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaac 44895164  T
Q  189 caagaacgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttgg 288  Q
    |||||||   ||| || ||||||||||||||||| | ||||||||| || | | |||||||||| ||||||| ||||||||||| |||||||||| ||||    
T  44895165 caagaaccaccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattgg 44895264  T
Q  289 caagattctcatcagttgttctaggagatagatg 322  Q
      | |||| |||||||  |||||| |||||||||    
T  44895265 tgacattcccatcagtgtttctagcagatagatg 44895298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 39472722 - 39472909
Alignment:
Q  89 acagatatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaac 188  Q
    |||| ||||||||||||| ||||| || | || ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  39472722 acagctatcttgtgctgagcaacaaatgcgaagagctccaagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaac 39472821  T
Q  189 caagaacgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaagg 276  Q
    |||||||   ||| || |||||||||||| |||||| |||| ||||||| |||||||| ||||| ||||| |||| | ||||||||||    
T  39472822 caagaactaccaaagaattttcagtattttctttcatgttaactttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagg 39472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 39138860 - 39138637
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||||||| ||||| ||   |||||||||||||||||||||| ||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||    
T  39138860 tcttgtgctgagcaacaaatgtgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaac 39138761  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagatt 295  Q
       ||  || |||||||||||   ||||| |||||||||||  | |||||||||||| ||||||||||||||||||  |||||||||  | ||  |||||    
T  39138760 caccagagaattttcagtatt---tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagatt 39138664  T
Q  296 ctcatcagttgttctaggagatagatg 322  Q
    ||||||||||||||||| ||| |||||    
T  39138663 ctcatcagttgttctagcagaaagatg 39138637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 96 - 312
Target Start/End: Original strand, 39396617 - 39396833
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||||||| |||| ||| ||||||||||||| |||||||||| ||| ||||||||||||||| ||| ||||||||||| ||  | ||||||||||||    
T  39396617 tcttgtgctgagcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaac 39396716  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagatt 295  Q
       ||| || |||||||||||| || | | || |||| |||| ||| |||||||||| | |||||||||||||||||||||| ||||| ||||  |||||    
T  39396717 cgccaaagaattttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagatt 39396816  T
Q  296 ctcatcagttgttctag 312  Q
    |||||||||| ||||||    
T  39396817 ctcatcagttcttctag 39396833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 39196487 - 39196700
Alignment:
Q  108 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 207  Q
    ||||| || ||||||||||||| |||||||||| ||||||||||  |||||||  || ||||||||||| ||| ||||| ||||||||   ||| || ||    
T  39196487 caacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaatt 39196586  T
Q  208 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 307  Q
    |||||||||  | |||| |||||||||||| |||| ||||||||| |||||||||| ||| |||||||||||||||  |||  |||||||||||||||||    
T  39196587 ttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagttgt 39196686  T
Q  308 tctaggagatagat 321  Q
    || || ||||||||    
T  39196687 tccagcagatagat 39196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 94 - 312
Target Start/End: Complemental strand, 39371336 - 39371118
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||||| | ||||| || ||||||||||||| | |||||||| |||||||||||||| |||| ||| | ||||||||| || |||||||||||||    
T  39371336 tatcttgtgctcagcaacaaatgcaaaaagctccaaaagttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaaga 39371237  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaaga 293  Q
    ||   ||| |  |||| | ||||| |||||| ||| |||||||  |||||||||||||| |||||||| |||||||||||||| | |||| ||||  |||    
T  39371236 accaccaaaggatttttactattttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgaga 39371137  T
Q  294 ttctcatcagttgttctag 312  Q
    || |||| |||||||||||    
T  39371136 ttttcataagttgttctag 39371118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 318
Target Start/End: Original strand, 39205709 - 39205929
Alignment:
Q  98 ttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgt 197  Q
    |||||| || ||||| || | |||| ||| || |||||||||||||||||||||  |||||||  || ||| ||||||| ||||||||||||||||||      
T  39205709 ttgtgcagagcaacaaatgccaaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccg 39205808  T
Q  198 tcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattct 297  Q
     ||  || |||||||||||| ||||||  ||||||||||| |||| ||||||||| ||||||| |||||| |||||||||| ||||  |||  |||||||    
T  39205809 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattct 39205908  T
Q  298 catcagttgttctaggagata 318  Q
    |||||||||||| || |||||    
T  39205909 catcagttgttcaagcagata 39205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 322
Target Start/End: Original strand, 39380457 - 39380685
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||||||| ||||  || ||||||||||||| | |||||||| ||| ||||||||||||||| ||| ||||||||||| ||||||||| ||||||    
T  39380457 tatcttgtgctgagcaaccaatgcaaaaagctccaaaatttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaaga 39380556  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaaga 293  Q
    ||   ||  || | |||||||||  || | | || ||||||||| |||||||||||| | | |||||||||||||||||||  || |||| | ||  |||    
T  39380557 accgccacagaatcttcagtattctctcttatgtaagctttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgaga 39380656  T
Q  294 ttctcatcagttgttctaggagatagatg 322  Q
     |||||||||||||||||| ||| |||||    
T  39380657 ctctcatcagttgttctagcagaaagatg 39380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 324
Target Start/End: Original strand, 39421149 - 39421376
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||| ||  ||| |||||| ||||   | ||||||||||| |||||||||||| |||    
T  39421149 tatcttgtgctgagcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgaga 39421248  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaaga 293  Q
    ||   |||    |||||||||||| ||| ||  ||||||||||| ||||| || ||||| |||||||||||| ||||||||| |||||||  |||  |||    
T  39421249 ac---caaattattttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgaga 39421345  T
Q  294 ttctcatcagttgttctaggagatagatgtg 324  Q
    || |||||||||||||||| ||| |||||||    
T  39421346 ttttcatcagttgttctagcagaaagatgtg 39421376  T

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Target: chr2; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 108 - 312
Target Start/End: Original strand, 39387471 - 39387675
Alignment:
Q  108 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 207  Q
    ||||| || ||||||||||||| ||||||||||  |||||| ||  |||||   ||| ||||||||||| ||| |||||||||||||||  ||| || ||    
T  39387471 caacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaatt 39387570  T
Q  208 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgt 307  Q
    |||||||||| |||||| ||||||||| || ||| | |||||||| |||||||||| | ||||||||| || |||  ||||  || ||||||||||||||    
T  39387571 ttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagttgt 39387670  T
Q  308 tctag 312  Q
    |||||    
T  39387671 tctag 39387675  T

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Target: chr2; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 279
Target Start/End: Original strand, 39412992 - 39413174
Alignment:
Q  94 tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga 193  Q
    ||||||||| ||| ||||| || ||||||||||||||| |||||||| ||| ||| |||||| |||| ||  || |||||||| ||  ||||||| ||||    
T  39412992 tatcttgtgttgagcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaaga 39413091  T
Q  194 acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggttt 279  Q
    ||   ||| || ||||| |||||| |||||| |||||||||||| |||||||||||||| ||||||||||   |||||||||||||    
T  39413092 accgccaaagagttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttctt---ttacacaaggttt 39413174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 39223926 - 39223715
Alignment:
Q  98 ttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgt 197  Q
    |||||| || ||||| || ||||||| ||||  |||||||||| |||||| |||  |||||||  || ||||||||||| ||| ||||||||||||||      
T  39223926 ttgtgcagagcaacaaatgcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccg 39223827  T
Q  198 tcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattct 297  Q
     ||| ||||||||||||||  |||||| |||  |||| || |||  ||||||||| ||||||| ||||||  ||||||||| ||||  |||  |||||||    
T  39223826 ccaaagatttttcagtattgtctttcatgttttcttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattct 39223727  T
Q  298 catcagttgttc 309  Q
    ||||||||||||    
T  39223726 catcagttgttc 39223715  T

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Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 321
Target Start/End: Complemental strand, 44615594 - 44615398
Alignment:
Q  128 aagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatttcctttcacgt 227  Q
    ||||||||||||| ||||||  || ||| |||| | | ||| || ||||||| |||||| |||||| | | ||| || ||||| |||||| |||||| ||    
T  44615594 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 44615495  T
Q  228 tagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatact---tggcaagattctcatcagttgttctaggagatagat 321  Q
    ||||||||||||||   |||||||| || ||||| ||||||||||||| ||||||| |   |||  ||||| |||||||||||||||| ||||||||    
T  44615494 tagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagatagat 44615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 39478260 - 39478420
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||| ||| |||||||| |||||| |||||| |||||| |||  || ||||||||||||||| ||| ||||||||||| |||||||||| |||||||    
T  39478260 tcttgtgttgagcaacagatgcaaaaa-ctccaaaacttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaac 39478358  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatg 257  Q
       | | || |||||||||||| || | | || ||||||||| ||| |||||||||| ||||    
T  39478359 tgccgaagaattttcagtattttctctgatgtaagctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 309
Target Start/End: Complemental strand, 39099811 - 39099591
Alignment:
Q  89 acagatatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaac 188  Q
    |||| ||||||||||||| || || |  |||||||||  || |||||||||| ||||||||||| |  ||||  || |||||||| ||  ||||||||||    
T  39099811 acagctatcttgtgctgagcagcaaacccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaac 39099712  T
Q  189 caagaacgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttgg 288  Q
    |||||||   ||  || ||||||||| || |  | |    || |||||||| |||||| ||||| |  ||||||||||||||||||||||| |||  |||    
T  39099711 caagaaccgccaccgaattttcagtagtttcacttataaaagatttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtgg 39099612  T
Q  289 caagattctcatcagttgttc 309  Q
      |||||||||||||||||||    
T  39099611 tgagattctcatcagttgttc 39099591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 39604403 - 39604321
Alignment:
Q  226 gttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgtt 308  Q
    ||||| |||||| | |||||||||||| | ||||||||||||||||| ||||||||||  |||   |||||||||||||||||    
T  39604403 gttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtt 39604321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 39126573 - 39126490
Alignment:
Q  226 gttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttc 309  Q
    ||||| |||||| | ||| |||||||| | ||||||||||||||||| ||||| |||| || |  |||||||||||||||||||    
T  39126573 gttagatttcaatttaagagctagcttcattgcttcttctcttacacgaggttcaatatttagtgagattctcatcagttgttc 39126490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 39188802 - 39188905
Alignment:
Q  179 agtagaaaaccaagaacgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtt 278  Q
    |||||||||||||||||   ||| || ||| || ||||| |||||| ||||||||| || ||||||||||| || | ||| || |||||||||  |||||    
T  39188802 agtagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtt 39188901  T
Q  279 taat 282  Q
    ||||    
T  39188902 taat 39188905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 39144679 - 39144626
Alignment:
Q  230 gctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaata 283  Q
    |||||||| |||||||||||||| | |||||||||| |||||  ||||||||||    
T  39144679 gctttcaaatcaagtgctagcttcattgcttcttcttttacatgaggtttaata 39144626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 312
Target Start/End: Complemental strand, 19809117 - 19808904
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||||||| ||||| || | |||||||||||||||||||||| ||||||| ||||||||||| ||| || |||||||| ||||||||||||||||||    
T  19809117 tcttgtgctgagcaacaaatgcgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaac 19809018  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagatt 295  Q
       ||  || |||||||||   | ||||| |||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||  | ||  |||||    
T  19809017 caccagagaattttcagta---cttttcatgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagatt 19808921  T
Q  296 ctcatcagttgttctag 312  Q
    |||||||||||||||||    
T  19808920 ctcatcagttgttctag 19808904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 89 - 343
Target Start/End: Complemental strand, 17060870 - 17060616
Alignment:
Q  89 acagatatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaac 188  Q
    |||||||||||||||| | |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||| ||| ||  ||||| ||||  ||||| |    
T  17060870 acagatatcttgtgctcagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatc 17060771  T
Q  189 caagaacgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttgg 288  Q
    | ||||| | |||||| | |||||||||| |||| | |||||||||||||||| |||||||||| || ||||| ||| ||||||||| ||||||| ||||    
T  17060770 cgagaacctccaatgaatattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttgg 17060671  T
Q  289 caagattctcatcagttgttctaggagatagatgtgcctttcactaataatcaca 343  Q
      | ||| |||||||||||||||| | | ||||| | ||||||  ||||||||||    
T  17060670 tgacattatcatcagttgttctagcataaagatgcggctttcatcaataatcaca 17060616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 321
Target Start/End: Complemental strand, 33562504 - 33562281
Alignment:
Q  98 ttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgt 197  Q
    |||||| || ||||| || ||||||||||||| |||||||||| ||||||||||  |||||||  || ||||||||||| ||  ||||||||||||||      
T  33562504 ttgtgcagagcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccg 33562405  T
Q  198 tcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattct 297  Q
     |||  |   |||||||||| |||||| |||||||||||| |||| ||||||||| |||||||||| ||| |||||||||| ||||  |||  |||||||    
T  33562404 ccaaaaaaaattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattct 33562305  T
Q  298 catcagttgttctaggagatagat 321  Q
    |||||||||||| || ||||||||    
T  33562304 catcagttgttccagaagatagat 33562281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 96 - 344
Target Start/End: Complemental strand, 16114584 - 16114336
Alignment:
Q  96 tcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaac 195  Q
    ||||||||||| |||||||| ||||||||||||| |||||   |||||| ||| |||| |||||| ||| || |||||||| ||| | |||||||| |||    
T  16114584 tcttgtgctgagcaacagatgcaaaaagctccaaaacttcgcatttatcgaaataagttagcaatccataaactgacaaaagcagcataaaaccaacaac 16114485  T
Q  196 gttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagatt 295  Q
       | |||| |||| ||||||  || ||| || ||||||||| ||  | |||||||| ||||||| ||||||||||| |||||||||| ||||  | |||    
T  16114484 agccgatgaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatatt 16114385  T
Q  296 ctcatcagttgttctaggagatagatgtgcctttcactaataatcacag 344  Q
    |||||||||| |||||  ||||||||||| | ||||  |||||||||||    
T  16114384 ctcatcagttcttctaacagatagatgtggcattcatcaataatcacag 16114336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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