View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4108_low_6 (Length: 325)

Name: NF4108_low_6
Description: NF4108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4108_low_6
NF4108_low_6
[»] chr4 (2 HSPs)
chr4 (1-312)||(3283952-3284259)
chr4 (138-215)||(865228-865306)
[»] chr5 (2 HSPs)
chr5 (156-214)||(7237070-7237128)
chr5 (139-206)||(41715148-41715216)
[»] chr1 (5 HSPs)
chr1 (139-215)||(7440929-7441006)
chr1 (157-215)||(6397661-6397719)
chr1 (138-209)||(28666876-28666945)
chr1 (255-312)||(6397763-6397820)
chr1 (269-314)||(27893965-27894010)
[»] chr8 (4 HSPs)
chr8 (138-215)||(14958112-14958190)
chr8 (156-215)||(9293233-9293292)
chr8 (162-209)||(15292567-15292614)
chr8 (162-209)||(15472936-15472983)
[»] chr3 (2 HSPs)
chr3 (138-215)||(8543127-8543207)
chr3 (162-215)||(11630117-11630170)
[»] chr2 (3 HSPs)
chr2 (167-215)||(31395170-31395218)
chr2 (162-215)||(13486134-13486186)
chr2 (139-215)||(38288428-38288502)
[»] chr6 (2 HSPs)
chr6 (156-215)||(33908581-33908640)
chr6 (255-312)||(9627232-9627291)
[»] scaffold0035 (1 HSPs)
scaffold0035 (156-198)||(24525-24567)
[»] chr7 (1 HSPs)
chr7 (163-200)||(15077119-15077156)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 3283952 - 3284259
Alignment:
Q  1 ttggaaggaaacgtaaattttatttgaagtttgaacaacaaaaatgttgtccattttgttnnnnnnnnn-gttgtccaatacaataaattttggatatgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  3283952 ttggaaggaaacgtaaattttatttgaagtttgaacaacaaaaatgttgtccattttgttcaaaaaaaaagttgtccaatacaataaattttggatatgt 3284051  T
Q  100 tagannnnnnnnnnctccctcaatcacatcaatgatgtttgttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaac 199  Q
    ||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3284052 tagatttttttttt-tccctcaatcacatcaatgatgtttgttagaacaacaatactaacataagattaaataaaagaccgaaagtaaaagacaatgaac 3284150  T
Q  200 atacgatatttgttaaaagatttcggcctatctctgtgactatagattaactatatatagttctgtttttattactgtgatgaattagggttttagcgtt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  3284151 atacgatatttgttaaaagatttcggcctatctctgtgactatag---aacaat-tatagttccgtttttattactgtgatgaattagggttttagcgtt 3284246  T
Q  300 acaagcaaaatat 312  Q
    |||||||||||||    
T  3284247 acaagcaaaatat 3284259  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 865228 - 865306
Alignment:
Q  138 ttgttagaacaacaat-actaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    |||||| ||||||||| | ||||| || ||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  865228 ttgttacaacaacaatcagtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaa 865306  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 7237070 - 7237128
Alignment:
Q  156 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgtta 214  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  7237070 taacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgtta 7237128  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 41715216 - 41715148
Alignment:
Q  139 tgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgat 206  Q
    |||||| ||||||| || ||||| |||||||||||||||| ||||||  ||||||||| ||||||||||    
T  41715216 tgttagcacaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgat 41715148  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 7441006 - 7440929
Alignment:
Q  139 tgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    |||||||||||||  || |||||||||||||||||||||| ||||||||||| |||||  | ||||||||||||||||    
T  7441006 tgttagaacaacatctagtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaa 7440929  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 6397661 - 6397719
Alignment:
Q  157 aacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||||||||||||||||||| | ||||||||| |||| |||||||| |||||||||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaa 6397719  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 28666945 - 28666876
Alignment:
Q  138 ttgttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 209  Q
    |||||||||||||  || ||||| |||||||||||||||| ||||||  |||||||||||||  ||||||||    
T  28666945 ttgttagaacaac--tagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcacgatatt 28666876  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 6397763 - 6397820
Alignment:
Q  255 tatagttctgtttttattactgtgatgaattagggttttagcgttacaagcaaaatat 312  Q
    ||||||| ||||| ||||||||||||||| || ||||| || ||||||||||| ||||    
T  6397763 tatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatat 6397820  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 27893965 - 27894010
Alignment:
Q  269 tattactgtgatgaattagggttttagcgttacaagcaaaatatga 314  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||    
T  27893965 tattactgtgatgagttatggtttcaacgttacaagcaaaatatga 27894010  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 14958190 - 14958112
Alignment:
Q  138 ttgttagaacaacaa-tactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||||||||||||| || ||||| ||||||||| |||||| ||||||   ||||||||||||||| ||||||||||||    
T  14958190 ttgttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaa 14958112  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 9293233 - 9293292
Alignment:
Q  156 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||| |||||||||||||||| | ||||  |||||||||||||| || |||||||||||    
T  9293233 taacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaa 9293292  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 15292567 - 15292614
Alignment:
Q  162 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 209  Q
    |||||||||||||||| ||||||||||||  |||||||| ||||||||    
T  15292567 aagattaaataagagaacgaaagtaaaagttaatgaacacacgatatt 15292614  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 15472936 - 15472983
Alignment:
Q  162 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatt 209  Q
    |||||||||||||||| ||||||||||||  |||||||| ||||||||    
T  15472936 aagattaaataagagaacgaaagtaaaagttaatgaacacacgatatt 15472983  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 8543207 - 8543127
Alignment:
Q  138 ttgttagaacaacaa--tactaacataagattaaataagagaccgaaagta-aaagacaatgaacatacgatatttgttaa 215  Q
    |||||||||||||||  || ||||| |||||||||||||||| ||||   | |||||||||||||||||||||||||||||    
T  8543207 ttgttagaacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaa 8543127  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 11630170 - 11630117
Alignment:
Q  162 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    |||||||||||||||| | |||| |||||||||||| |||||||||||||||||    
T  11630170 aagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaa 11630117  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 31395170 - 31395218
Alignment:
Q  167 taaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||||||| | |||||||||||||||||||||| | ||||||||||||    
T  31395170 taaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaa 31395218  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 13486134 - 13486186
Alignment:
Q  162 aagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    |||||||||||||||| |||||| |||| ||||||||||||| |||||| ||||    
T  13486134 aagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaa 13486186  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 38288428 - 38288502
Alignment:
Q  139 tgttagaacaacaatactaacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||||||||||  || ||||| ||||||||||||||||  |||||  ||||||||| |||| | ||||||||||||    
T  38288428 tgttagaacaac--tagtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaa 38288502  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 33908581 - 33908640
Alignment:
Q  156 taacataagattaaataagagaccgaaagtaaaagacaatgaacatacgatatttgttaa 215  Q
    ||||| || ||||||||||||| ||||||  |||||||||||||| | ||||||||||||    
T  33908581 taacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaa 33908640  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 9627232 - 9627291
Alignment:
Q  255 tatagttctgtttttattactgtgat--gaattagggttttagcgttacaagcaaaatat 312  Q
    ||||||||||||| ||| ||||||||  |||||||||||| || ||||||||||| ||||    
T  9627232 tatagttctgtttctatcactgtgataagaattagggtttcagtgttacaagcaatatat 9627291  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 24567 - 24525
Alignment:
Q  156 taacataagattaaataagagaccgaaagtaaaagacaatgaa 198  Q
    ||||| |||||||||||||||| | ||||||||||||||||||    
T  24567 taacagaagattaaataagagaacaaaagtaaaagacaatgaa 24525  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 15077119 - 15077156
Alignment:
Q  163 agattaaataagagaccgaaagtaaaagacaatgaaca 200  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  15077119 agattaaataagagaacgaaagtaaaaaacaatgaaca 15077156  T

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