View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4109_high_1 (Length: 392)
Name: NF4109_high_1
Description: NF4109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4109_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 41080559 - 41080184
Alignment:
| Q |
1 |
aaaagatccttaaaacacaaagctatactgaagttgaagtgtttagttagaactcatcatggtgctagggatgatgctcataactgttgtagtcaaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080559 |
aaaagatccttaaaacacaaagctatactgaagttgaagtgtttagttagaactcatcatggtgctagggatgatgctcataactgttgtagtcaaaaag |
41080460 |
T |
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| Q |
101 |
aagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080459 |
aagatgaacaaggtaaacttggtttttacctagctaaagatcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaat |
41080360 |
T |
|
| Q |
201 |
tttaccagctagggaattacttaggtatatgttaatgtcactcatnnnnnnngtgataaaatattttgctcccaagtcagctgcaagatggtttggaaca |
300 |
Q |
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| T |
41080359 |
tttaccagctagggaattacttaggtatatgttaatgtcactcataaaaaaagtgataaaatattttgctcctaagtcagcagcaagatggtttggaaca |
41080260 |
T |
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| Q |
301 |
agtaacaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatag |
376 |
Q |
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| T |
41080259 |
agtagcaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatag |
41080184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 23111181 - 23111248
Alignment:
| Q |
307 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgat |
374 |
Q |
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| T |
23111181 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacactggaggaaaagcagtgat |
23111248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 23073156 - 23073089
Alignment:
| Q |
307 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgat |
374 |
Q |
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| T |
23073156 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacacaggaggaaaagcagtgat |
23073089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 23077761 - 23077694
Alignment:
| Q |
307 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgat |
374 |
Q |
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| T |
23077761 |
aaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgat |
23077694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 23111036 - 23111121
Alignment:
| Q |
141 |
tcttccaaaagcagctacaagagcttttacagataatttaagggtgttatcacctaaaattttaccagctagggaattacttaggt |
226 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| | ||||| |||||||| ||| | | |||| ||||||||| |
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| T |
23111036 |
tcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttgccaacaaaggaaatacttaggt |
23111121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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